source.jalview.org Git - jalview.git/commit

git://source.jalview.org / jalview.git / commit

author	cmzmasek@gmail.com <cmzmasek@gmail.com@ca865154-3058-d1c3-3e42-d8f55a55bdbd>
	Sat, 5 May 2012 00:13:23 +0000 (00:13 +0000)
committer	cmzmasek@gmail.com <cmzmasek@gmail.com@ca865154-3058-d1c3-3e42-d8f55a55bdbd>
	Sat, 5 May 2012 00:13:23 +0000 (00:13 +0000)
commit	73c5b11c1a00e539afb246e345ebf3f042dded78
tree	70f8dc6bc94fc9499363eeb2f7b9b0808427a984	tree \| snapshot
parent	7bd2b51cf167a38ef4e11fa45d8877706f40e4a2	commit \| diff

in progress

43 files changed:

forester/java/src/org/forester/application/pfam2go_extractor.java		diff \| blob \| history
forester/java/src/org/forester/application/surfacing.java		diff \| blob \| history
forester/java/src/org/forester/application/surfacing_hmmpfam.java	[deleted file]	blob \| history
forester/java/src/org/forester/go/PfamToGoMapping.java		diff \| blob \| history
forester/java/src/org/forester/go/PfamToGoParser.java		diff \| blob \| history
forester/java/src/org/forester/go/TestGo.java		diff \| blob \| history
forester/java/src/org/forester/go/etc/MetaOntologizer.java		diff \| blob \| history
forester/java/src/org/forester/io/parsers/HmmPfamOutputParser.java		diff \| blob \| history
forester/java/src/org/forester/io/parsers/HmmscanPerDomainTableParser.java		diff \| blob \| history
forester/java/src/org/forester/protein/BasicProtein.java	[moved from forester/java/src/org/forester/surfacing/BasicProtein.java with 88% similarity]	diff \| blob \| history
forester/java/src/org/forester/protein/BinaryDomainCombination.java	[moved from forester/java/src/org/forester/surfacing/BinaryDomainCombination.java with 98% similarity]	diff \| blob \| history
forester/java/src/org/forester/protein/Domain.java	[moved from forester/java/src/org/forester/surfacing/Domain.java with 97% similarity]	diff \| blob \| history
forester/java/src/org/forester/protein/DomainId.java	[moved from forester/java/src/org/forester/surfacing/DomainId.java with 98% similarity]	diff \| blob \| history
forester/java/src/org/forester/protein/Protein.java	[moved from forester/java/src/org/forester/surfacing/Protein.java with 96% similarity]	diff \| blob \| history
forester/java/src/org/forester/protein/ProteinId.java	[moved from forester/java/src/org/forester/surfacing/ProteinId.java with 98% similarity]	diff \| blob \| history
forester/java/src/org/forester/species/BasicSpecies.java	[moved from forester/java/src/org/forester/surfacing/BasicSpecies.java with 98% similarity]	diff \| blob \| history
forester/java/src/org/forester/species/Species.java	[moved from forester/java/src/org/forester/surfacing/Species.java with 97% similarity]	diff \| blob \| history
forester/java/src/org/forester/surfacing/AdjactantDirectedBinaryDomainCombination.java		diff \| blob \| history
forester/java/src/org/forester/surfacing/AdjactantDirectedCombinableDomains.java		diff \| blob \| history
forester/java/src/org/forester/surfacing/BasicBinaryDomainCombination.java		diff \| blob \| history
forester/java/src/org/forester/surfacing/BasicCombinableDomains.java		diff \| blob \| history
forester/java/src/org/forester/surfacing/BasicDomain.java		diff \| blob \| history
forester/java/src/org/forester/surfacing/BasicDomainSimilarityCalculator.java		diff \| blob \| history
forester/java/src/org/forester/surfacing/BasicGenomeWideCombinableDomains.java		diff \| blob \| history
forester/java/src/org/forester/surfacing/CombinableDomains.java		diff \| blob \| history
forester/java/src/org/forester/surfacing/CombinationsBasedPairwiseDomainSimilarityCalculator.java		diff \| blob \| history
forester/java/src/org/forester/surfacing/DirectedBinaryDomainCombination.java		diff \| blob \| history
forester/java/src/org/forester/surfacing/DirectedCombinableDomains.java		diff \| blob \| history
forester/java/src/org/forester/surfacing/DomainArchitectureBasedGenomeSimilarityCalculator.java		diff \| blob \| history
forester/java/src/org/forester/surfacing/DomainCountsDifferenceUtil.java		diff \| blob \| history
forester/java/src/org/forester/surfacing/DomainLengths.java		diff \| blob \| history
forester/java/src/org/forester/surfacing/DomainLengthsTable.java		diff \| blob \| history
forester/java/src/org/forester/surfacing/DomainParsimonyCalculator.java		diff \| blob \| history
forester/java/src/org/forester/surfacing/DomainSimilarity.java		diff \| blob \| history
forester/java/src/org/forester/surfacing/GenomeWideCombinableDomains.java		diff \| blob \| history
forester/java/src/org/forester/surfacing/PairwiseGenomeComparator.java		diff \| blob \| history
forester/java/src/org/forester/surfacing/PrintableDomainSimilarity.java		diff \| blob \| history
forester/java/src/org/forester/surfacing/PrintableSpeciesSpecificDomainSimilariyData.java		diff \| blob \| history
forester/java/src/org/forester/surfacing/SimpleDomain.java		diff \| blob \| history
forester/java/src/org/forester/surfacing/SpeciesSpecificDomainSimilariyData.java		diff \| blob \| history
forester/java/src/org/forester/surfacing/SurfacingUtil.java		diff \| blob \| history
forester/java/src/org/forester/surfacing/TestSurfacing.java		diff \| blob \| history
forester/java/src/org/forester/test/Test.java		diff \| blob \| history

RSS Atom