JAL-3116 parse EMBL XML with JAXB (todo: update unit tests)
authorgmungoc <g.m.carstairs@dundee.ac.uk>
Fri, 14 Sep 2018 16:11:40 +0000 (17:11 +0100)
committergmungoc <g.m.carstairs@dundee.ac.uk>
Fri, 14 Sep 2018 16:11:40 +0000 (17:11 +0100)
commit7e82e1fed011077e5cd4cc40ac8ad3519d7c47a8
tree35a368aa49a86b943b3a31a743760933cfb5f311
parent88515cdb74e4603a40c8c1dca14107b5ca503e04
JAL-3116 parse EMBL XML with JAXB (todo: update unit tests)
28 files changed:
schemas/embl.xsd [new file with mode: 0644]
schemas/embl_bindings.xml [new file with mode: 0644]
schemas/uniprot.xsd
src/jalview/datamodel/xdb/embl/EmblEntry.java [deleted file]
src/jalview/datamodel/xdb/embl/EmblError.java [deleted file]
src/jalview/datamodel/xdb/embl/EmblFeature.java [deleted file]
src/jalview/datamodel/xdb/embl/EmblFile.java [deleted file]
src/jalview/datamodel/xdb/embl/EmblSequence.java [deleted file]
src/jalview/datamodel/xdb/embl/Qualifier.java [deleted file]
src/jalview/gui/AlignFrame.java
src/jalview/gui/AlignViewport.java
src/jalview/gui/AlignmentPanel.java
src/jalview/gui/CalculationChooser.java
src/jalview/gui/FontChooser.java
src/jalview/gui/Jalview2XML.java
src/jalview/gui/Jalview2XML_V1.java
src/jalview/gui/PCAPanel.java
src/jalview/gui/SplitFrame.java
src/jalview/gui/TreeCanvas.java
src/jalview/gui/TreePanel.java
src/jalview/gui/VamsasApplication.java
src/jalview/ws/dbsources/EmblXmlSource.java
src/jalview/ws/dbsources/Uniprot.java
src/jalview/xml/binding/embl/EntrySetType.java [new file with mode: 0644]
src/jalview/xml/binding/embl/EntryType.java [new file with mode: 0644]
src/jalview/xml/binding/embl/ObjectFactory.java [new file with mode: 0644]
src/jalview/xml/binding/embl/ROOT.java [new file with mode: 0644]
src/jalview/xml/binding/embl/XrefType.java [new file with mode: 0644]