source.jalview.org Git - jalview.git/commit

git://source.jalview.org / jalview.git / commit

author	cmzmasek@gmail.com <cmzmasek@gmail.com@ca865154-3058-d1c3-3e42-d8f55a55bdbd>
	Wed, 18 Feb 2015 17:51:23 +0000 (17:51 +0000)
committer	cmzmasek@gmail.com <cmzmasek@gmail.com@ca865154-3058-d1c3-3e42-d8f55a55bdbd>
	Wed, 18 Feb 2015 17:51:23 +0000 (17:51 +0000)
commit	806db7d96607fa04c73ecfcfd8d46fbf41c3e85d
tree	2c33e6f6024e5bc1752a0945d3b1100209d80ef9	tree \| snapshot
parent	d2daa0766fdd6de6be74003e2ec6045ea86e7b11	commit \| diff

permissions = sandbox

511 files changed:

forester/java/archaeopteryx_applets.jar		diff \| blob \| history
forester/java/classes/org/forester/analysis/AncestralTaxonomyInference.class		diff \| blob \| history
forester/java/classes/org/forester/analysis/AncestralTaxonomyInferenceException.class		diff \| blob \| history
forester/java/classes/org/forester/analysis/TaxonomyDataManager$1.class		diff \| blob \| history
forester/java/classes/org/forester/analysis/TaxonomyDataManager$QUERY_TYPE.class		diff \| blob \| history
forester/java/classes/org/forester/analysis/TaxonomyDataManager.class		diff \| blob \| history
forester/java/classes/org/forester/application/annotator.class		diff \| blob \| history
forester/java/classes/org/forester/application/check_fasta.class		diff \| blob \| history
forester/java/classes/org/forester/application/confadd.class		diff \| blob \| history
forester/java/classes/org/forester/application/count_support.class		diff \| blob \| history
forester/java/classes/org/forester/application/decorator.class		diff \| blob \| history
forester/java/classes/org/forester/application/decoratorX.class		diff \| blob \| history
forester/java/classes/org/forester/application/dom_dup.class		diff \| blob \| history
forester/java/classes/org/forester/application/gene_tree_preprocess.class		diff \| blob \| history
forester/java/classes/org/forester/application/goac.class		diff \| blob \| history
forester/java/classes/org/forester/application/gsdi.class		diff \| blob \| history
forester/java/classes/org/forester/application/mcc.class		diff \| blob \| history
forester/java/classes/org/forester/application/meta_ontologizer.class		diff \| blob \| history
forester/java/classes/org/forester/application/msa_compactor.class		diff \| blob \| history
forester/java/classes/org/forester/application/nj.class		diff \| blob \| history
forester/java/classes/org/forester/application/obo_tool.class		diff \| blob \| history
forester/java/classes/org/forester/application/pccx.class		diff \| blob \| history
forester/java/classes/org/forester/application/pfam2go_extractor.class		diff \| blob \| history
forester/java/classes/org/forester/application/pfam_go.class		diff \| blob \| history
forester/java/classes/org/forester/application/pfamacc2go.class		diff \| blob \| history
forester/java/classes/org/forester/application/pfamacc2pfamid.class		diff \| blob \| history
forester/java/classes/org/forester/application/phylostrip.class		diff \| blob \| history
forester/java/classes/org/forester/application/phyloxml_converter.class		diff \| blob \| history
forester/java/classes/org/forester/application/rio$1.class		diff \| blob \| history
forester/java/classes/org/forester/application/rio.class		diff \| blob \| history
forester/java/classes/org/forester/application/support_statistics.class		diff \| blob \| history
forester/java/classes/org/forester/application/support_transfer.class		diff \| blob \| history
forester/java/classes/org/forester/application/surfacing$1.class		diff \| blob \| history
forester/java/classes/org/forester/application/surfacing.class		diff \| blob \| history
forester/java/classes/org/forester/archaeopteryx/AptxUtil$GraphicsExportType.class		diff \| blob \| history
forester/java/classes/org/forester/archaeopteryx/AptxUtil.class		diff \| blob \| history
forester/java/classes/org/forester/archaeopteryx/Archaeopteryx.class		diff \| blob \| history
forester/java/classes/org/forester/archaeopteryx/ArchaeopteryxA.class		diff \| blob \| history
forester/java/classes/org/forester/archaeopteryx/ArchaeopteryxE$1.class		diff \| blob \| history
forester/java/classes/org/forester/archaeopteryx/ArchaeopteryxE$2.class		diff \| blob \| history
forester/java/classes/org/forester/archaeopteryx/ArchaeopteryxE$3.class		diff \| blob \| history
forester/java/classes/org/forester/archaeopteryx/ArchaeopteryxE.class		diff \| blob \| history
forester/java/classes/org/forester/archaeopteryx/ColorSchemeChooser$1.class		diff \| blob \| history
forester/java/classes/org/forester/archaeopteryx/ColorSchemeChooser$2.class		diff \| blob \| history
forester/java/classes/org/forester/archaeopteryx/ColorSchemeChooser$3.class		diff \| blob \| history
forester/java/classes/org/forester/archaeopteryx/ColorSchemeChooser.class		diff \| blob \| history
forester/java/classes/org/forester/archaeopteryx/Configuration$EXT_NODE_DATA_RETURN_ON.class		diff \| blob \| history
forester/java/classes/org/forester/archaeopteryx/Configuration$TRIPLET.class		diff \| blob \| history
forester/java/classes/org/forester/archaeopteryx/Configuration$UI.class		diff \| blob \| history
forester/java/classes/org/forester/archaeopteryx/Configuration.class		diff \| blob \| history
forester/java/classes/org/forester/archaeopteryx/Constants.class		diff \| blob \| history
forester/java/classes/org/forester/archaeopteryx/ControlPanel$1.class		diff \| blob \| history
forester/java/classes/org/forester/archaeopteryx/ControlPanel$2.class		diff \| blob \| history
forester/java/classes/org/forester/archaeopteryx/ControlPanel$3.class		diff \| blob \| history
forester/java/classes/org/forester/archaeopteryx/ControlPanel$4.class		diff \| blob \| history
forester/java/classes/org/forester/archaeopteryx/ControlPanel$5.class		diff \| blob \| history
forester/java/classes/org/forester/archaeopteryx/ControlPanel$6.class		diff \| blob \| history
forester/java/classes/org/forester/archaeopteryx/ControlPanel$7.class		diff \| blob \| history
forester/java/classes/org/forester/archaeopteryx/ControlPanel$NodeClickAction.class		diff \| blob \| history
forester/java/classes/org/forester/archaeopteryx/ControlPanel.class		diff \| blob \| history
forester/java/classes/org/forester/archaeopteryx/DefaultFilter.class		diff \| blob \| history
forester/java/classes/org/forester/archaeopteryx/FontChooser.class		diff \| blob \| history
forester/java/classes/org/forester/archaeopteryx/GraphicsFileFilter.class		diff \| blob \| history
forester/java/classes/org/forester/archaeopteryx/MainFrame$1.class		diff \| blob \| history
forester/java/classes/org/forester/archaeopteryx/MainFrame$2.class		diff \| blob \| history
forester/java/classes/org/forester/archaeopteryx/MainFrame.class		diff \| blob \| history
forester/java/classes/org/forester/archaeopteryx/MainFrameApplet$1.class		diff \| blob \| history
forester/java/classes/org/forester/archaeopteryx/MainFrameApplet$2.class		diff \| blob \| history
forester/java/classes/org/forester/archaeopteryx/MainFrameApplet$3.class		diff \| blob \| history
forester/java/classes/org/forester/archaeopteryx/MainFrameApplet.class		diff \| blob \| history
forester/java/classes/org/forester/archaeopteryx/MainFrameApplication$1.class		diff \| blob \| history
forester/java/classes/org/forester/archaeopteryx/MainFrameApplication$2.class		diff \| blob \| history
forester/java/classes/org/forester/archaeopteryx/MainFrameApplication$3.class		diff \| blob \| history
forester/java/classes/org/forester/archaeopteryx/MainFrameApplication$4.class		diff \| blob \| history
forester/java/classes/org/forester/archaeopteryx/MainFrameApplication.class		diff \| blob \| history
forester/java/classes/org/forester/archaeopteryx/MainPanel$1.class		diff \| blob \| history
forester/java/classes/org/forester/archaeopteryx/MainPanel$2.class		diff \| blob \| history
forester/java/classes/org/forester/archaeopteryx/MainPanel$3.class		diff \| blob \| history
forester/java/classes/org/forester/archaeopteryx/MainPanel$4.class		diff \| blob \| history
forester/java/classes/org/forester/archaeopteryx/MainPanel$5.class		diff \| blob \| history
forester/java/classes/org/forester/archaeopteryx/MainPanel.class		diff \| blob \| history
forester/java/classes/org/forester/archaeopteryx/MainPanelApplets.class		diff \| blob \| history
forester/java/classes/org/forester/archaeopteryx/MouseListener.class		diff \| blob \| history
forester/java/classes/org/forester/archaeopteryx/MsaFileFilter.class		diff \| blob \| history
forester/java/classes/org/forester/archaeopteryx/NHFilter.class		diff \| blob \| history
forester/java/classes/org/forester/archaeopteryx/NHXFilter.class		diff \| blob \| history
forester/java/classes/org/forester/archaeopteryx/NexusFilter.class		diff \| blob \| history
forester/java/classes/org/forester/archaeopteryx/NodeEditPanel$1.class		diff \| blob \| history
forester/java/classes/org/forester/archaeopteryx/NodeEditPanel$2.class		diff \| blob \| history
forester/java/classes/org/forester/archaeopteryx/NodeEditPanel$3.class		diff \| blob \| history
forester/java/classes/org/forester/archaeopteryx/NodeEditPanel$PHYLOXML_TAG.class		diff \| blob \| history
forester/java/classes/org/forester/archaeopteryx/NodeEditPanel$TagNumber.class		diff \| blob \| history
forester/java/classes/org/forester/archaeopteryx/NodeEditPanel.class		diff \| blob \| history
forester/java/classes/org/forester/archaeopteryx/NodeFrame$1.class		diff \| blob \| history
forester/java/classes/org/forester/archaeopteryx/NodeFrame$2.class		diff \| blob \| history
forester/java/classes/org/forester/archaeopteryx/NodeFrame.class		diff \| blob \| history
forester/java/classes/org/forester/archaeopteryx/NodePanel.class		diff \| blob \| history
forester/java/classes/org/forester/archaeopteryx/Options$CLADOGRAM_TYPE.class		diff \| blob \| history
forester/java/classes/org/forester/archaeopteryx/Options$NODE_LABEL_DIRECTION.class		diff \| blob \| history
forester/java/classes/org/forester/archaeopteryx/Options$OVERVIEW_PLACEMENT_TYPE.class		diff \| blob \| history
forester/java/classes/org/forester/archaeopteryx/Options$PHYLOGENY_GRAPHICS_TYPE.class		diff \| blob \| history
forester/java/classes/org/forester/archaeopteryx/Options.class		diff \| blob \| history
forester/java/classes/org/forester/archaeopteryx/PdfExporter.class		diff \| blob \| history
forester/java/classes/org/forester/archaeopteryx/PdfFilter.class		diff \| blob \| history
forester/java/classes/org/forester/archaeopteryx/Printer.class		diff \| blob \| history
forester/java/classes/org/forester/archaeopteryx/SequencesFileFilter.class		diff \| blob \| history
forester/java/classes/org/forester/archaeopteryx/TextFrame$1.class		diff \| blob \| history
forester/java/classes/org/forester/archaeopteryx/TextFrame.class		diff \| blob \| history
forester/java/classes/org/forester/archaeopteryx/TolFilter.class		diff \| blob \| history
forester/java/classes/org/forester/archaeopteryx/TreeColorSet.class		diff \| blob \| history
forester/java/classes/org/forester/archaeopteryx/TreeFontSet.class		diff \| blob \| history
forester/java/classes/org/forester/archaeopteryx/TreePanel$1.class		diff \| blob \| history
forester/java/classes/org/forester/archaeopteryx/TreePanel$2.class		diff \| blob \| history
forester/java/classes/org/forester/archaeopteryx/TreePanel$3.class		diff \| blob \| history
forester/java/classes/org/forester/archaeopteryx/TreePanel$NodeColorizationActionListener.class		diff \| blob \| history
forester/java/classes/org/forester/archaeopteryx/TreePanel$SubtreeColorizationActionListener.class		diff \| blob \| history
forester/java/classes/org/forester/archaeopteryx/TreePanel.class		diff \| blob \| history
forester/java/classes/org/forester/archaeopteryx/TreePanelUtil.class		diff \| blob \| history
forester/java/classes/org/forester/archaeopteryx/UrlTreeReader$1.class		diff \| blob \| history
forester/java/classes/org/forester/archaeopteryx/UrlTreeReader.class		diff \| blob \| history
forester/java/classes/org/forester/archaeopteryx/XMLFilter.class		diff \| blob \| history
forester/java/classes/org/forester/archaeopteryx/phylogeny/data/RenderableDomainArchitecture.class		diff \| blob \| history
forester/java/classes/org/forester/archaeopteryx/phylogeny/data/RenderableMsaSequence.class	[new file with mode: 0644]	blob
forester/java/classes/org/forester/archaeopteryx/phylogeny/data/RenderablePhylogenyData.class		diff \| blob \| history
forester/java/classes/org/forester/archaeopteryx/phylogeny/data/RenderableVector.class		diff \| blob \| history
forester/java/classes/org/forester/archaeopteryx/tools/AncestralTaxonomyInferrer.class		diff \| blob \| history
forester/java/classes/org/forester/archaeopteryx/tools/Blast.class		diff \| blob \| history
forester/java/classes/org/forester/archaeopteryx/tools/ImageLoader.class		diff \| blob \| history
forester/java/classes/org/forester/archaeopteryx/tools/InferenceManager.class		diff \| blob \| history
forester/java/classes/org/forester/archaeopteryx/tools/PhyloInferenceDialog$1.class		diff \| blob \| history
forester/java/classes/org/forester/archaeopteryx/tools/PhyloInferenceDialog.class		diff \| blob \| history
forester/java/classes/org/forester/archaeopteryx/tools/PhylogeneticInferenceOptions.class		diff \| blob \| history
forester/java/classes/org/forester/archaeopteryx/tools/PhylogeneticInferrer$1.class		diff \| blob \| history
forester/java/classes/org/forester/archaeopteryx/tools/PhylogeneticInferrer$MSA_PRG.class		diff \| blob \| history
forester/java/classes/org/forester/archaeopteryx/tools/PhylogeneticInferrer.class		diff \| blob \| history
forester/java/classes/org/forester/archaeopteryx/tools/ProcessPool.class		diff \| blob \| history
forester/java/classes/org/forester/archaeopteryx/tools/ProcessRunning.class		diff \| blob \| history
forester/java/classes/org/forester/archaeopteryx/tools/RunnableProcess.class		diff \| blob \| history
forester/java/classes/org/forester/archaeopteryx/tools/SequenceDataRetriver.class		diff \| blob \| history
forester/java/classes/org/forester/archaeopteryx/webservices/BasicPhylogeniesWebserviceClient.class		diff \| blob \| history
forester/java/classes/org/forester/archaeopteryx/webservices/PhylogeniesWebserviceClient.class		diff \| blob \| history
forester/java/classes/org/forester/archaeopteryx/webservices/WebserviceUtil.class		diff \| blob \| history
forester/java/classes/org/forester/archaeopteryx/webservices/WebservicesManager$WsPhylogenyFormat.class		diff \| blob \| history
forester/java/classes/org/forester/archaeopteryx/webservices/WebservicesManager.class		diff \| blob \| history
forester/java/classes/org/forester/datastructures/IntMatrix.class		diff \| blob \| history
forester/java/classes/org/forester/datastructures/Queue.class		diff \| blob \| history
forester/java/classes/org/forester/development/AbstractRenderer.class		diff \| blob \| history
forester/java/classes/org/forester/development/DevelopmentTools.class		diff \| blob \| history
forester/java/classes/org/forester/development/Hello3d.class		diff \| blob \| history
forester/java/classes/org/forester/development/HmmerRest.class		diff \| blob \| history
forester/java/classes/org/forester/development/MsaRenderer$1.class		diff \| blob \| history
forester/java/classes/org/forester/development/MsaRenderer$2.class		diff \| blob \| history
forester/java/classes/org/forester/development/MsaRenderer.class		diff \| blob \| history
forester/java/classes/org/forester/development/RandomThing.class		diff \| blob \| history
forester/java/classes/org/forester/development/ResidueRenderer.class		diff \| blob \| history
forester/java/classes/org/forester/development/Test.class		diff \| blob \| history
forester/java/classes/org/forester/development/Time.class		diff \| blob \| history
forester/java/classes/org/forester/development/neTest$DoublePointer.class		diff \| blob \| history
forester/java/classes/org/forester/development/neTest.class		diff \| blob \| history
forester/java/classes/org/forester/evoinference/TestPhylogenyReconstruction.class		diff \| blob \| history
forester/java/classes/org/forester/evoinference/distance/NeighborJoining.class		diff \| blob \| history
forester/java/classes/org/forester/evoinference/distance/NeighborJoiningF.class		diff \| blob \| history
forester/java/classes/org/forester/evoinference/distance/NeighborJoiningR.class		diff \| blob \| history
forester/java/classes/org/forester/evoinference/distance/PairwiseDistanceCalculator$PWD_DISTANCE_METHOD.class		diff \| blob \| history
forester/java/classes/org/forester/evoinference/distance/PairwiseDistanceCalculator.class		diff \| blob \| history
forester/java/classes/org/forester/evoinference/distance/Sarray.class		diff \| blob \| history
forester/java/classes/org/forester/evoinference/distance/Sset.class		diff \| blob \| history
forester/java/classes/org/forester/evoinference/matrix/character/BasicCharacterStateMatrix$1.class		diff \| blob \| history
forester/java/classes/org/forester/evoinference/matrix/character/BasicCharacterStateMatrix.class		diff \| blob \| history
forester/java/classes/org/forester/evoinference/matrix/character/CharacterStateMatrix$1.class		diff \| blob \| history
forester/java/classes/org/forester/evoinference/matrix/character/CharacterStateMatrix$BinaryStates.class		diff \| blob \| history
forester/java/classes/org/forester/evoinference/matrix/character/CharacterStateMatrix$Format.class		diff \| blob \| history
forester/java/classes/org/forester/evoinference/matrix/character/CharacterStateMatrix$GainLossStates.class		diff \| blob \| history
forester/java/classes/org/forester/evoinference/matrix/character/CharacterStateMatrix$NucleotideStates.class		diff \| blob \| history
forester/java/classes/org/forester/evoinference/matrix/character/CharacterStateMatrix.class		diff \| blob \| history
forester/java/classes/org/forester/evoinference/matrix/distance/BasicSymmetricalDistanceMatrix$1.class		diff \| blob \| history
forester/java/classes/org/forester/evoinference/matrix/distance/BasicSymmetricalDistanceMatrix.class		diff \| blob \| history
forester/java/classes/org/forester/evoinference/matrix/distance/DistanceMatrix$Format.class		diff \| blob \| history
forester/java/classes/org/forester/evoinference/matrix/distance/DistanceMatrix.class		diff \| blob \| history
forester/java/classes/org/forester/evoinference/parsimony/DolloParsimony.class		diff \| blob \| history
forester/java/classes/org/forester/evoinference/parsimony/FitchParsimony.class		diff \| blob \| history
forester/java/classes/org/forester/evoinference/parsimony/SankoffParsimony.class		diff \| blob \| history
forester/java/classes/org/forester/evoinference/tools/BootstrapResampler.class		diff \| blob \| history
forester/java/classes/org/forester/go/BasicGoRelationship$1.class		diff \| blob \| history
forester/java/classes/org/forester/go/BasicGoRelationship.class		diff \| blob \| history
forester/java/classes/org/forester/go/BasicGoSubset$1.class		diff \| blob \| history
forester/java/classes/org/forester/go/BasicGoSubset.class		diff \| blob \| history
forester/java/classes/org/forester/go/BasicGoTerm.class		diff \| blob \| history
forester/java/classes/org/forester/go/BasicGoXRef$1.class		diff \| blob \| history
forester/java/classes/org/forester/go/BasicGoXRef.class		diff \| blob \| history
forester/java/classes/org/forester/go/GoId.class		diff \| blob \| history
forester/java/classes/org/forester/go/GoNameSpace$1.class		diff \| blob \| history
forester/java/classes/org/forester/go/GoNameSpace$GoNamespaceType.class		diff \| blob \| history
forester/java/classes/org/forester/go/GoNameSpace.class		diff \| blob \| history
forester/java/classes/org/forester/go/GoRelationship$Type.class		diff \| blob \| history
forester/java/classes/org/forester/go/GoRelationship.class		diff \| blob \| history
forester/java/classes/org/forester/go/GoSubset$Type.class		diff \| blob \| history
forester/java/classes/org/forester/go/GoSubset.class		diff \| blob \| history
forester/java/classes/org/forester/go/GoTerm.class		diff \| blob \| history
forester/java/classes/org/forester/go/GoUtils.class		diff \| blob \| history
forester/java/classes/org/forester/go/GoXRef$Type.class		diff \| blob \| history
forester/java/classes/org/forester/go/GoXRef.class		diff \| blob \| history
forester/java/classes/org/forester/go/Mapping.class		diff \| blob \| history
forester/java/classes/org/forester/go/OBOparser$1.class		diff \| blob \| history
forester/java/classes/org/forester/go/OBOparser$ReturnType.class		diff \| blob \| history
forester/java/classes/org/forester/go/OBOparser.class		diff \| blob \| history
forester/java/classes/org/forester/go/PfamToGoMapping.class		diff \| blob \| history
forester/java/classes/org/forester/go/PfamToGoParser.class		diff \| blob \| history
forester/java/classes/org/forester/go/TestGo.class		diff \| blob \| history
forester/java/classes/org/forester/go/etc/MetaOntologizer$1.class		diff \| blob \| history
forester/java/classes/org/forester/go/etc/MetaOntologizer.class		diff \| blob \| history
forester/java/classes/org/forester/go/etc/OntologizerResult$TYPE.class		diff \| blob \| history
forester/java/classes/org/forester/go/etc/OntologizerResult.class		diff \| blob \| history
forester/java/classes/org/forester/io/parsers/FastaParser.class		diff \| blob \| history
forester/java/classes/org/forester/io/parsers/GeneralMsaParser.class		diff \| blob \| history
forester/java/classes/org/forester/io/parsers/HmmPfamOutputParser$FilterType.class		diff \| blob \| history
forester/java/classes/org/forester/io/parsers/HmmPfamOutputParser$ReturnType.class		diff \| blob \| history
forester/java/classes/org/forester/io/parsers/HmmPfamOutputParser.class		diff \| blob \| history
forester/java/classes/org/forester/io/parsers/HmmscanPerDomainTableParser$FilterType.class		diff \| blob \| history
forester/java/classes/org/forester/io/parsers/HmmscanPerDomainTableParser$INDIVIDUAL_SCORE_CUTOFF.class		diff \| blob \| history
forester/java/classes/org/forester/io/parsers/HmmscanPerDomainTableParser$ReturnType.class		diff \| blob \| history
forester/java/classes/org/forester/io/parsers/HmmscanPerDomainTableParser.class		diff \| blob \| history
forester/java/classes/org/forester/io/parsers/IteratingPhylogenyParser.class		diff \| blob \| history
forester/java/classes/org/forester/io/parsers/PhylogenyParser.class		diff \| blob \| history
forester/java/classes/org/forester/io/parsers/SymmetricalDistanceMatrixParser$1.class		diff \| blob \| history
forester/java/classes/org/forester/io/parsers/SymmetricalDistanceMatrixParser$InputMatrixType.class		diff \| blob \| history
forester/java/classes/org/forester/io/parsers/SymmetricalDistanceMatrixParser.class		diff \| blob \| history
forester/java/classes/org/forester/io/parsers/nexus/NexusBinaryStatesMatrixParser.class		diff \| blob \| history
forester/java/classes/org/forester/io/parsers/nexus/NexusCharactersParser.class		diff \| blob \| history
forester/java/classes/org/forester/io/parsers/nexus/NexusConstants.class		diff \| blob \| history
forester/java/classes/org/forester/io/parsers/nexus/NexusFormatException.class		diff \| blob \| history
forester/java/classes/org/forester/io/parsers/nexus/NexusPhylogeniesParser.class		diff \| blob \| history
forester/java/classes/org/forester/io/parsers/nexus/PaupLogParser.class		diff \| blob \| history
forester/java/classes/org/forester/io/parsers/nhx/NHXFormatException.class		diff \| blob \| history
forester/java/classes/org/forester/io/parsers/nhx/NHXParser$TAXONOMY_EXTRACTION.class		diff \| blob \| history
forester/java/classes/org/forester/io/parsers/nhx/NHXParser.class		diff \| blob \| history
forester/java/classes/org/forester/io/parsers/nhx/NHXtags.class		diff \| blob \| history
forester/java/classes/org/forester/io/parsers/phyloxml/PhyloXmlDataFormatException.class		diff \| blob \| history
forester/java/classes/org/forester/io/parsers/phyloxml/PhyloXmlException.class		diff \| blob \| history
forester/java/classes/org/forester/io/parsers/phyloxml/PhyloXmlHandler.class		diff \| blob \| history
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forester/java/classes/org/forester/util/StringInt$DescendingIntComparator.class	[new file with mode: 0644]	blob
forester/java/classes/org/forester/util/StringInt.class	[new file with mode: 0644]	blob
forester/java/classes/org/forester/util/SystemCommandExecutor.class		diff \| blob \| history
forester/java/classes/org/forester/util/TaxonomyColors.class		diff \| blob \| history
forester/java/classes/org/forester/util/TaxonomyGroups.class		diff \| blob \| history
forester/java/classes/org/forester/util/TaxonomyUtil.class		diff \| blob \| history
forester/java/classes/org/forester/util/ThreadedStreamHandler.class		diff \| blob \| history
forester/java/classes/org/forester/util/WindowsUtils$StreamReader.class		diff \| blob \| history
forester/java/classes/org/forester/util/WindowsUtils.class		diff \| blob \| history
forester/java/classes/org/forester/ws/hmmer/Test.class		diff \| blob \| history
forester/java/classes/org/forester/ws/seqdb/EbiDbEntry.class		diff \| blob \| history
forester/java/classes/org/forester/ws/seqdb/SequenceDatabaseEntry.class		diff \| blob \| history
forester/java/classes/org/forester/ws/seqdb/SequenceDbWsTools.class		diff \| blob \| history
forester/java/classes/org/forester/ws/seqdb/UniProtEntry.class		diff \| blob \| history
forester/java/classes/org/forester/ws/seqdb/UniProtTaxonomy.class		diff \| blob \| history
forester/java/classes/org/forester/ws/wabi/RestUtil.class		diff \| blob \| history
forester/java/classes/org/forester/ws/wabi/TxSearch$RANKS.class		diff \| blob \| history
forester/java/classes/org/forester/ws/wabi/TxSearch$TAX_NAME_CLASS.class		diff \| blob \| history
forester/java/classes/org/forester/ws/wabi/TxSearch$TAX_RANK.class		diff \| blob \| history
forester/java/classes/org/forester/ws/wabi/TxSearch.class		diff \| blob \| history
forester/java/classes/org/forester/ws/wabi/WabiTools.class		diff \| blob \| history
forester/java/src/org/forester/archaeopteryx/Constants.java		diff \| blob \| history

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