source.jalview.org Git - jalview.git/commit

git://source.jalview.org / jalview.git / commit

author	Jim Procter <jprocter@dundee.ac.uk>
	Mon, 5 Aug 2024 15:14:37 +0000 (16:14 +0100)
committer	Jim Procter <jprocter@dundee.ac.uk>
	Mon, 5 Aug 2024 15:14:37 +0000 (16:14 +0100)
commit	8261f257af8a4a9509a6bb8054b0016dfeae4a55
tree	1ba18aa864145ace9530458020ea56943b0afbe2	tree \| snapshot
parent	b02e2539ae024c042885be9e3f03ed1262d708c9	commit \| diff

JAL-1551 gradle spotlessApply and doc tweaks

69 files changed:

src/jalview/analysis/AAFrequency.java		diff \| blob \| history
src/jalview/analysis/AlignSeq.java		diff \| blob \| history
src/jalview/analysis/AlignmentUtils.java		diff \| blob \| history
src/jalview/analysis/ConnectivityException.java		diff \| blob \| history
src/jalview/analysis/Finder.java		diff \| blob \| history
src/jalview/analysis/PaSiMap.java		diff \| blob \| history
src/jalview/analysis/ccAnalysis.java		diff \| blob \| history
src/jalview/analysis/scoremodels/DistanceScoreModel.java		diff \| blob \| history
src/jalview/analysis/scoremodels/FeatureDistanceModel.java		diff \| blob \| history
src/jalview/analysis/scoremodels/ScoreModels.java		diff \| blob \| history
src/jalview/analysis/scoremodels/SecondaryStructureDistanceModel.java		diff \| blob \| history
src/jalview/analysis/scoremodels/SimilarityParams.java		diff \| blob \| history
src/jalview/api/AlignViewControllerI.java		diff \| blob \| history
src/jalview/api/AlignViewportI.java		diff \| blob \| history
src/jalview/api/analysis/ScoreModelI.java		diff \| blob \| history
src/jalview/api/analysis/SimilarityParamsI.java		diff \| blob \| history
src/jalview/appletgui/AlignFrame.java		diff \| blob \| history
src/jalview/bin/Cache.java		diff \| blob \| history
src/jalview/bin/JalviewLite.java		diff \| blob \| history
src/jalview/commands/JustifyLeftOrRightCommand.java		diff \| blob \| history
src/jalview/controller/AlignViewController.java		diff \| blob \| history
src/jalview/datamodel/PDBEntry.java		diff \| blob \| history
src/jalview/datamodel/Profile.java		diff \| blob \| history
src/jalview/datamodel/ProfileI.java		diff \| blob \| history
src/jalview/datamodel/SecondaryStructureCount.java		diff \| blob \| history
src/jalview/datamodel/SequenceGroup.java		diff \| blob \| history
src/jalview/gui/AlignFrame.java		diff \| blob \| history
src/jalview/gui/AlignViewport.java		diff \| blob \| history
src/jalview/gui/AppJmol.java		diff \| blob \| history
src/jalview/gui/CalculationChooser.java		diff \| blob \| history
src/jalview/gui/CutAndPasteTransfer.java		diff \| blob \| history
src/jalview/gui/Desktop.java		diff \| blob \| history
src/jalview/gui/FontChooser.java		diff \| blob \| history
src/jalview/gui/PaSiMapPanel.java		diff \| blob \| history
src/jalview/gui/PairwiseAlignPanel.java		diff \| blob \| history
src/jalview/gui/PopupMenu.java		diff \| blob \| history
src/jalview/gui/ProgressBar.java		diff \| blob \| history
src/jalview/gui/RotatableCanvas.java		diff \| blob \| history
src/jalview/gui/StructureChooser.java		diff \| blob \| history
src/jalview/gui/structurechooser/ThreeDBStructureChooserQuerySource.java		diff \| blob \| history
src/jalview/jbgui/GAlignFrame.java		diff \| blob \| history
src/jalview/jbgui/GCutAndPasteTransfer.java		diff \| blob \| history
src/jalview/jbgui/GPCAPanel.java		diff \| blob \| history
src/jalview/jbgui/GPaSiMapPanel.java		diff \| blob \| history
src/jalview/jbgui/GPreferences.java		diff \| blob \| history
src/jalview/math/Matrix.java		diff \| blob \| history
src/jalview/math/MatrixI.java		diff \| blob \| history
src/jalview/math/MiscMath.java		diff \| blob \| history
src/jalview/project/Jalview2XML.java		diff \| blob \| history
src/jalview/renderer/AnnotationRenderer.java		diff \| blob \| history
src/jalview/renderer/ResidueShader.java		diff \| blob \| history
src/jalview/renderer/ResidueShaderI.java		diff \| blob \| history
src/jalview/schemes/ClustalxColourScheme.java		diff \| blob \| history
src/jalview/schemes/ResidueProperties.java		diff \| blob \| history
src/jalview/util/Constants.java		diff \| blob \| history
src/jalview/viewmodel/AlignmentViewport.java		diff \| blob \| history
src/jalview/viewmodel/PaSiMapModel.java		diff \| blob \| history
src/jalview/workers/SecondaryStructureConsensusThread.java		diff \| blob \| history
test/jalview/analysis/AlignSeqTest.java		diff \| blob \| history
test/jalview/analysis/AlignmentUtilsTests.java		diff \| blob \| history
test/jalview/analysis/scoremodels/ScoreModelsTest.java		diff \| blob \| history
test/jalview/analysis/scoremodels/SecondaryStructureDistanceModelTest.java		diff \| blob \| history
test/jalview/commands/EditCommandTest.java		diff \| blob \| history
test/jalview/gui/AssociatePDBFileTest.java		diff \| blob \| history
test/jalview/gui/CalculationChooserTest.java		diff \| blob \| history
test/jalview/project/Jalview2xmlTests.java		diff \| blob \| history
test/jalview/renderer/ResidueShaderTest.java		diff \| blob \| history
test/jalview/schemes/ClustalxColourSchemeTest.java		diff \| blob \| history
test/jalview/util/FileUtilsTest.java		diff \| blob \| history

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