JAL-838 added 'SeqSpace' PID mode, added parameters to findDistances and
authorgmungoc <g.m.carstairs@dundee.ac.uk>
Fri, 24 Feb 2017 18:38:56 +0000 (18:38 +0000)
committergmungoc <g.m.carstairs@dundee.ac.uk>
Fri, 24 Feb 2017 18:38:56 +0000 (18:38 +0000)
commit8717834368bd00d8adfa47ee099288acd34363ef
tree2494895fae319f2c4c481cb7a543fb34286f9585
parent70af62ad365829d2fc430db10336cf13c4d4ce1a
JAL-838 added 'SeqSpace' PID mode, added parameters to findDistances and
findSimilarities (not yet acted on!)
12 files changed:
src/jalview/analysis/NJTree.java
src/jalview/analysis/PCA.java
src/jalview/analysis/scoremodels/FeatureDistanceModel.java
src/jalview/analysis/scoremodels/PIDDistanceModel.java
src/jalview/analysis/scoremodels/PIDModel.java
src/jalview/analysis/scoremodels/SWDistanceModel.java
src/jalview/analysis/scoremodels/ScoreMatrix.java
src/jalview/analysis/scoremodels/SimilarityParams.java
src/jalview/api/analysis/DistanceScoreModelI.java
src/jalview/api/analysis/SimilarityScoreModelI.java
test/jalview/analysis/scoremodels/FeatureDistanceModelTest.java
test/jalview/analysis/scoremodels/ScoreMatrixTest.java