JAL-1628 drop getShowAnnotation accessor in favour of isShowAnnotation in AlignViewpo...
authorJim Procter <jprocter@dundee.ac.uk>
Fri, 23 Jan 2015 08:59:19 +0000 (08:59 +0000)
committerJim Procter <jprocter@dundee.ac.uk>
Fri, 23 Jan 2015 09:03:03 +0000 (09:03 +0000)
commit8d6b113f475c6b5916f7685cfd289e054d95a9ee
tree991a8ac44b9c2ca0dfba5c54147f35a4ed06ce43
parent24c13cae7ab462fb159be2daa62ef7e7c812e0e9
JAL-1628 drop getShowAnnotation accessor in favour of isShowAnnotation in AlignViewportI and change method signature for printing annotation files to allow view (for column selection) and alignment object to be accessed
14 files changed:
src/jalview/api/AlignViewportI.java
src/jalview/appletgui/AlignFrame.java
src/jalview/gui/AlignFrame.java
src/jalview/gui/AlignViewport.java
src/jalview/gui/AlignmentPanel.java
src/jalview/gui/AnnotationExporter.java
src/jalview/gui/AnnotationLabels.java
src/jalview/gui/Jalview2XML.java
src/jalview/io/AnnotationFile.java
src/jalview/viewmodel/AlignmentViewport.java
src/jalview/ws/rest/params/AnnotationFile.java
test/jalview/ws/jabaws/DisorderAnnotExportImport.java
test/jalview/ws/jabaws/JpredJabaStructExportImport.java
test/jalview/ws/jabaws/RNAStructExportImport.java