source.jalview.org Git - jalview.git/commit

git://source.jalview.org / jalview.git / commit

author	gmungoc <g.m.carstairs@dundee.ac.uk>
	Fri, 20 Apr 2018 21:01:08 +0000 (22:01 +0100)
committer	gmungoc <g.m.carstairs@dundee.ac.uk>
	Fri, 20 Apr 2018 21:01:08 +0000 (22:01 +0100)
commit	9ce5bbd251a067e0c5b1969725121498bcfb28a0
tree	67cc5a13ab44e3b3ff62c71e9f83e1de5adb238d	tree \| snapshot
parent	04a4d60a50394d846d0479c442facebe360b5b9c	commit \| diff

JAL-2629 update spikes/mungo to latest

53 files changed:

.ant-targets-build.xml		diff \| blob \| history
.classpath		diff \| blob \| history
benchmarking/src/main/java/org/jalview/HiddenColsIteratorsBenchmark.java	[new file with mode: 0644]	blob
benchmarking/src/main/java/org/jalview/SeqWidthBenchmark.java	[new file with mode: 0644]	blob
build.xml		diff \| blob \| history
resources/lang/Messages.properties		diff \| blob \| history
resources/lang/Messages_es.properties		diff \| blob \| history
src/jalview/analysis/SeqsetUtils.java		diff \| blob \| history
src/jalview/appletgui/OverviewCanvas.java		diff \| blob \| history
src/jalview/datamodel/Alignment.java		diff \| blob \| history
src/jalview/datamodel/HiddenMarkovModel.java		diff \| blob \| history
src/jalview/datamodel/Sequence.java		diff \| blob \| history
src/jalview/datamodel/SequenceCollectionI.java		diff \| blob \| history
src/jalview/datamodel/SequenceGroup.java		diff \| blob \| history
src/jalview/datamodel/SequenceI.java		diff \| blob \| history
src/jalview/gui/AlignFrame.java		diff \| blob \| history
src/jalview/gui/AquaInternalFrameManager.java		diff \| blob \| history
src/jalview/gui/JvSwingUtils.java		diff \| blob \| history
src/jalview/gui/OptsAndParamsPage.java		diff \| blob \| history
src/jalview/gui/OverviewCanvas.java		diff \| blob \| history
src/jalview/gui/PopupMenu.java		diff \| blob \| history
src/jalview/gui/Preferences.java		diff \| blob \| history
src/jalview/gui/WsJobParameters.java		diff \| blob \| history
src/jalview/hmmer/HMMAlign.java		diff \| blob \| history
src/jalview/hmmer/HMMBuild.java		diff \| blob \| history
src/jalview/hmmer/HMMERParamStore.java		diff \| blob \| history
src/jalview/hmmer/HMMSearch.java		diff \| blob \| history
src/jalview/hmmer/HmmerCommand.java		diff \| blob \| history
src/jalview/io/FileLoader.java		diff \| blob \| history
src/jalview/jbgui/GPreferences.java		diff \| blob \| history
src/jalview/jbgui/GRestInputParamEditDialog.java		diff \| blob \| history
src/jalview/jbgui/GRestServiceEditorPane.java		diff \| blob \| history
src/jalview/renderer/OverviewRenderer.java		diff \| blob \| history
src/jalview/schemes/HmmerColourScheme.java		diff \| blob \| history
src/jalview/schemes/HmmerGlobalBackground.java		diff \| blob \| history
src/jalview/schemes/HmmerLocalBackground.java		diff \| blob \| history
src/jalview/util/FileUtils.java	[new file with mode: 0644]	blob
src/jalview/util/Platform.java		diff \| blob \| history
src/jalview/viewmodel/seqfeatures/FeatureRendererModel.java		diff \| blob \| history
src/jalview/workers/InformationThread.java		diff \| blob \| history
src/jalview/ws/jws2/Jws2Client.java		diff \| blob \| history
src/jalview/ws/params/simple/BooleanOption.java		diff \| blob \| history
src/jalview/ws/params/simple/DoubleParameter.java		diff \| blob \| history
src/jalview/ws/params/simple/IntegerParameter.java		diff \| blob \| history
src/jalview/ws/params/simple/LogarithmicParameter.java		diff \| blob \| history
src/jalview/ws/params/simple/Option.java		diff \| blob \| history
test/jalview/hmmer/HMMERTest.java		diff \| blob \| history
test/jalview/renderer/OverviewRendererTest.java	[new file with mode: 0644]	blob
test/jalview/renderer/seqfeatures/FeatureRendererTest.java		diff \| blob \| history
test/jalview/schemes/HmmerGlobalBackgroundTest.java		diff \| blob \| history
test/jalview/schemes/HmmerLocalBackgroundTest.java		diff \| blob \| history
test/jalview/ws/gui/Jws2ParamView.java		diff \| blob \| history
utils/i18nAnt.xml		diff \| blob \| history

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