in progress
authorcmzmasek <cmzmasek@yahoo.com>
Tue, 14 Feb 2017 18:43:57 +0000 (10:43 -0800)
committercmzmasek <cmzmasek@yahoo.com>
Tue, 14 Feb 2017 18:43:57 +0000 (10:43 -0800)
commita2be52673716ddf6f158c0831075d47635779e64
tree11e2b70f0aa22c834c4e84e2a040ba7fc77692e7
parent86e9249b554df5fec473c2b1e4a19a43f28444ce
in progress
21 files changed:
forester/java/src/org/forester/archaeopteryx/Configuration.java
forester/java/src/org/forester/archaeopteryx/ControlPanel.java
forester/java/src/org/forester/archaeopteryx/MainFrameApplication.java
forester/java/src/org/forester/phylogeny/PhylogenyMethods.java
forester/perl/forester.pm
forester/perl/phylo_pl.pl
forester/ruby/evoruby/exe/tap.rb
forester/ruby/evoruby/lib/evo/io/parser/fasta_parser.rb
forester/ruby/evoruby/lib/evo/io/parser/general_msa_parser.rb
forester/ruby/evoruby/lib/evo/io/parser/hmmscan_parser.rb
forester/ruby/evoruby/lib/evo/msa/msa.rb
forester/ruby/evoruby/lib/evo/tool/domain_sequence_extractor.rb
forester/ruby/evoruby/lib/evo/tool/domains_to_forester.rb
forester/ruby/evoruby/lib/evo/tool/fasta_taxonomy_processor.rb
forester/ruby/evoruby/lib/evo/tool/hmmscan_summary.rb
forester/ruby/evoruby/lib/evo/tool/phylogenies_decorator.rb
forester/ruby/evoruby/lib/evo/tool/phylogeny_factory.rb
forester/ruby/evoruby/lib/evo/tool/taxonomy_processor.rb
forester/ruby/evoruby/lib/evo/util/command_line_arguments.rb
forester/ruby/evoruby/lib/evo/util/constants.rb
forester/ruby/evoruby/lib/evo/util/util.rb