source.jalview.org Git - jalview.git/commit

git://source.jalview.org / jalview.git / commit

author	James Procter <j.procter@dundee.ac.uk>
	Wed, 15 Mar 2023 10:54:19 +0000 (10:54 +0000)
committer	James Procter <j.procter@dundee.ac.uk>
	Wed, 15 Mar 2023 10:54:19 +0000 (10:54 +0000)
commit	a81e74154d35e10958b58c3c9411aa9ee21880a6
tree	736f21eb4dbb87ada170dd477027668ebd3843d6	tree \| snapshot
parent	947f3eec987c61ea044731137930ef7d0c89128f	commit \| diff

JAL-4134 JAL-3855 store/restore groups, tree and threshold used to cluster a PAE matrix

74 files changed:

schemas/vamsas.xsd		diff \| blob \| history
src/jalview/datamodel/ContactMatrixI.java		diff \| blob \| history
src/jalview/project/Jalview2XML.java		diff \| blob \| history
src/jalview/ws/datamodel/alphafold/PAEContactMatrix.java		diff \| blob \| history
src/jalview/xml/binding/embl/EntrySetType.java		diff \| blob \| history
src/jalview/xml/binding/embl/EntryType.java		diff \| blob \| history
src/jalview/xml/binding/embl/ObjectFactory.java		diff \| blob \| history
src/jalview/xml/binding/embl/ROOT.java		diff \| blob \| history
src/jalview/xml/binding/embl/XrefType.java		diff \| blob \| history
src/jalview/xml/binding/jalview/AlcodonFrame.java		diff \| blob \| history
src/jalview/xml/binding/jalview/Annotation.java		diff \| blob \| history
src/jalview/xml/binding/jalview/AnnotationColourScheme.java		diff \| blob \| history
src/jalview/xml/binding/jalview/AnnotationElement.java		diff \| blob \| history
src/jalview/xml/binding/jalview/DoubleMatrix.java		diff \| blob \| history
src/jalview/xml/binding/jalview/DoubleVector.java		diff \| blob \| history
src/jalview/xml/binding/jalview/Feature.java		diff \| blob \| history
src/jalview/xml/binding/jalview/FeatureMatcher.java		diff \| blob \| history
src/jalview/xml/binding/jalview/FeatureMatcherSet.java		diff \| blob \| history
src/jalview/xml/binding/jalview/FilterBy.java		diff \| blob \| history
src/jalview/xml/binding/jalview/JalviewModel.java		diff \| blob \| history
src/jalview/xml/binding/jalview/JalviewUserColours.java		diff \| blob \| history
src/jalview/xml/binding/jalview/MapListType.java		diff \| blob \| history
src/jalview/xml/binding/jalview/Mapping.java		diff \| blob \| history
src/jalview/xml/binding/jalview/MatrixType.java		diff \| blob \| history
src/jalview/xml/binding/jalview/NoValueColour.java		diff \| blob \| history
src/jalview/xml/binding/jalview/ObjectFactory.java		diff \| blob \| history
src/jalview/xml/binding/jalview/PcaDataType.java		diff \| blob \| history
src/jalview/xml/binding/jalview/Pdbentry.java		diff \| blob \| history
src/jalview/xml/binding/jalview/Sequence.java		diff \| blob \| history
src/jalview/xml/binding/jalview/SequenceSet.java		diff \| blob \| history
src/jalview/xml/binding/jalview/SequenceType.java		diff \| blob \| history
src/jalview/xml/binding/jalview/ThresholdType.java		diff \| blob \| history
src/jalview/xml/binding/jalview/VAMSAS.java		diff \| blob \| history
src/jalview/xml/binding/jalview/WebServiceParameterSet.java		diff \| blob \| history
src/jalview/xml/binding/jalview/package-info.java		diff \| blob \| history
src/jalview/xml/binding/uniprot/CitationType.java		diff \| blob \| history
src/jalview/xml/binding/uniprot/CofactorType.java		diff \| blob \| history
src/jalview/xml/binding/uniprot/CommentType.java		diff \| blob \| history
src/jalview/xml/binding/uniprot/ConsortiumType.java		diff \| blob \| history
src/jalview/xml/binding/uniprot/DbReferenceType.java		diff \| blob \| history
src/jalview/xml/binding/uniprot/Entry.java		diff \| blob \| history
src/jalview/xml/binding/uniprot/EventType.java		diff \| blob \| history
src/jalview/xml/binding/uniprot/EvidenceType.java		diff \| blob \| history
src/jalview/xml/binding/uniprot/EvidencedStringType.java		diff \| blob \| history
src/jalview/xml/binding/uniprot/FeatureType.java		diff \| blob \| history
src/jalview/xml/binding/uniprot/GeneLocationType.java		diff \| blob \| history
src/jalview/xml/binding/uniprot/GeneNameType.java		diff \| blob \| history
src/jalview/xml/binding/uniprot/GeneType.java		diff \| blob \| history
src/jalview/xml/binding/uniprot/ImportedFromType.java		diff \| blob \| history
src/jalview/xml/binding/uniprot/InteractantType.java		diff \| blob \| history
src/jalview/xml/binding/uniprot/IsoformType.java		diff \| blob \| history
src/jalview/xml/binding/uniprot/KeywordType.java		diff \| blob \| history
src/jalview/xml/binding/uniprot/LocationType.java		diff \| blob \| history
src/jalview/xml/binding/uniprot/MoleculeType.java		diff \| blob \| history
src/jalview/xml/binding/uniprot/NameListType.java		diff \| blob \| history
src/jalview/xml/binding/uniprot/ObjectFactory.java		diff \| blob \| history
src/jalview/xml/binding/uniprot/OrganismNameType.java		diff \| blob \| history
src/jalview/xml/binding/uniprot/OrganismType.java		diff \| blob \| history
src/jalview/xml/binding/uniprot/PersonType.java		diff \| blob \| history
src/jalview/xml/binding/uniprot/PhysiologicalReactionType.java		diff \| blob \| history
src/jalview/xml/binding/uniprot/PositionType.java		diff \| blob \| history
src/jalview/xml/binding/uniprot/PropertyType.java		diff \| blob \| history
src/jalview/xml/binding/uniprot/ProteinExistenceType.java		diff \| blob \| history
src/jalview/xml/binding/uniprot/ProteinType.java		diff \| blob \| history
src/jalview/xml/binding/uniprot/ReactionType.java		diff \| blob \| history
src/jalview/xml/binding/uniprot/ReferenceType.java		diff \| blob \| history
src/jalview/xml/binding/uniprot/SequenceType.java		diff \| blob \| history
src/jalview/xml/binding/uniprot/SourceDataType.java		diff \| blob \| history
src/jalview/xml/binding/uniprot/SourceType.java		diff \| blob \| history
src/jalview/xml/binding/uniprot/StatusType.java		diff \| blob \| history
src/jalview/xml/binding/uniprot/SubcellularLocationType.java		diff \| blob \| history
src/jalview/xml/binding/uniprot/Uniprot.java		diff \| blob \| history
src/jalview/xml/binding/uniprot/package-info.java		diff \| blob \| history
test/jalview/project/Jalview2xmlTests.java		diff \| blob \| history

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