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(parent: 53b2ec1) | patch
JAL-3253 jalview.bin.Instance streamlining
authorhansonr <hansonr@STO24954W.ad.stolaf.edu>
Fri, 10 May 2019 18:00:33 +0000 (13:00 -0500)
committerhansonr <hansonr@STO24954W.ad.stolaf.edu>
Fri, 10 May 2019 18:00:33 +0000 (13:00 -0500)
commitad1f4306281b0894fa42394b9a68da834cf14af6
tree0873f80cf56428439be42d278269dd68099ed9f6tree | snapshot
parent53b2ec17b88081e402f60deab2723750bc4867d1commit | diff
JAL-3253 jalview.bin.Instance streamlining
81 files changed:
src/jalview/analysis/AlignmentSorter.java diff | blob | history
src/jalview/analysis/CrossRef.java diff | blob | history
src/jalview/analysis/scoremodels/ScoreModels.java diff | blob | history
src/jalview/bin/Cache.java diff | blob | history
src/jalview/bin/Instance.java diff | blob | history
src/jalview/bin/Jalview.java diff | blob | history
src/jalview/datamodel/features/SequenceFeatures.java diff | blob | history
src/jalview/ext/ensembl/EnsemblCds.java diff | blob | history
src/jalview/ext/ensembl/EnsemblGene.java diff | blob | history
src/jalview/ext/ensembl/EnsemblInfo.java diff | blob | history
src/jalview/ext/ensembl/EnsemblSeqProxy.java diff | blob | history
src/jalview/ext/so/SequenceOntology.java diff | blob | history
src/jalview/fts/service/pdb/PDBFTSRestClient.java diff | blob | history
src/jalview/fts/service/uniprot/UniProtFTSRestClient.java diff | blob | history
src/jalview/gui/AlignFrame.java diff | blob | history
src/jalview/gui/AlignViewport.java diff | blob | history
src/jalview/gui/AnnotationLabels.java diff | blob | history
src/jalview/gui/AssociatePdbFileWithSeq.java diff | blob | history
src/jalview/gui/CrossRefAction.java diff | blob | history
src/jalview/gui/Desktop.java diff | blob | history
src/jalview/gui/JalviewDialog.java diff | blob | history
src/jalview/gui/Preferences.java diff | blob | history
src/jalview/gui/SequenceFetcher.java diff | blob | history
src/jalview/gui/SliderPanel.java diff | blob | history
src/jalview/gui/SplashScreen.java diff | blob | history
src/jalview/gui/SplitFrame.java diff | blob | history
src/jalview/gui/StructureChooser.java diff | blob | history
src/jalview/gui/StructureViewerBase.java diff | blob | history
src/jalview/gui/VamsasApplication.java diff | blob | history
src/jalview/gui/WsJobParameters.java diff | blob | history
src/jalview/gui/WsParamSetManager.java diff | blob | history
src/jalview/gui/WsPreferences.java diff | blob | history
src/jalview/httpserver/HttpServer.java diff | blob | history
src/jalview/io/FileLoader.java diff | blob | history
src/jalview/io/VamsasAppDatastore.java diff | blob | history
src/jalview/io/gff/Gff3Helper.java diff | blob | history
src/jalview/io/gff/InterProScanHelper.java diff | blob | history
src/jalview/io/gff/SequenceOntologyFactory.java diff | blob | history
src/jalview/io/vamsas/Sequencemapping.java diff | blob | history
src/jalview/project/Jalview2XML.java diff | blob | history
src/jalview/rest/RestHandler.java diff | blob | history
src/jalview/schemes/AnnotationColourGradient.java diff | blob | history
src/jalview/schemes/ColourSchemeProperty.java diff | blob | history
src/jalview/schemes/ColourSchemes.java diff | blob | history
src/jalview/schemes/RNAHelicesColour.java diff | blob | history
src/jalview/structure/StructureImportSettings.java diff | blob | history
src/jalview/structure/StructureSelectionManager.java diff | blob | history
src/jalview/urls/IdOrgSettings.java diff | blob | history
src/jalview/ws/DBRefFetcher.java diff | blob | history
src/jalview/ws/SequenceFetcher.java diff | blob | history
src/jalview/ws/SequenceFetcherFactory.java diff | blob | history
src/jalview/ws/jws1/Discoverer.java diff | blob | history
src/jalview/ws/jws2/Jws2Client.java diff | blob | history
src/jalview/ws/jws2/Jws2Discoverer.java diff | blob | history
src/jalview/ws/jws2/SequenceAnnotationWSClient.java diff | blob | history
src/jalview/ws/jws2/jabaws2/Jws2Instance.java diff | blob | history
src/jalview/ws/jws2/jabaws2/Jws2InstanceFactory.java diff | blob | history
src/jalview/ws/seqfetcher/ASequenceFetcher.java diff | blob | history
src/jalview/ws/sifts/SiftsClient.java diff | blob | history
src/jalview/ws/sifts/SiftsSettings.java diff | blob | history
test/jalview/analysis/CrossRefTest.java diff | blob | history
test/jalview/ext/jmol/JmolViewerTest.java diff | blob | history
test/jalview/ext/rbvi/chimera/JalviewChimeraView.java diff | blob | history
test/jalview/gui/AlignFrameTest.java diff | blob | history
test/jalview/gui/AlignViewportTest.java diff | blob | history
test/jalview/gui/FreeUpMemoryTest.java diff | blob | history
test/jalview/gui/SeqPanelTest.java diff | blob | history
test/jalview/io/AnnotatedPDBFileInputTest.java diff | blob | history
test/jalview/io/CrossRef2xmlTests.java diff | blob | history
test/jalview/io/FeaturesFileTest.java diff | blob | history
test/jalview/io/Jalview2xmlBase.java diff | blob | history
test/jalview/io/JalviewExportPropertiesTests.java diff | blob | history
test/jalview/project/Jalview2xmlTests.java diff | blob | history
test/jalview/schemes/ColourSchemesTest.java diff | blob | history
test/jalview/structure/StructureSelectionManagerTest.java diff | blob | history
test/jalview/ws/PDBSequenceFetcherTest.java diff | blob | history
test/jalview/ws/SequenceFetcherTest.java diff | blob | history
test/jalview/ws/dbsources/RemoteFormatTest.java diff | blob | history
test/jalview/ws/jabaws/JalviewJabawsTestUtils.java diff | blob | history
test/jalview/ws/seqfetcher/DbRefFetcherTest.java diff | blob | history
test/jalview/ws/sifts/SiftsClientTest.java diff | blob | history