JAL-629 More NG arguments: --features, --annotations, --sortbytree, --tree, --groovy...
authorBen Soares <b.soares@dundee.ac.uk>
Thu, 4 May 2023 15:49:00 +0000 (16:49 +0100)
committerBen Soares <b.soares@dundee.ac.uk>
Thu, 4 May 2023 15:49:00 +0000 (16:49 +0100)
commitadff51745d97ff4fd30a188a68efa29cc83202e3
treeb3492b8ce7bc139b8e3d2184059ef06c0c439a0e
parentb8781bdce3e54b27102f53d1e3cb5fe2c9d27b6c
JAL-629 More NG arguments: --features, --annotations, --sortbytree, --tree, --groovy.  More consistent arg naming and processing of test output.  Actual java process tests for ng commandline.  Store BootstrapArgs in ArgParser.
src/jalview/bin/Commands.java
src/jalview/bin/Jalview.java
src/jalview/bin/argparser/Arg.java
src/jalview/bin/argparser/ArgParser.java
src/jalview/bin/argparser/BootstrapArgs.java
src/jalview/io/FileFormat.java
test/jalview/bin/CommandLineOperations.java
test/jalview/bin/CommandLineOperationsNG.java [new file with mode: 0644]
test/jalview/bin/CommandsTest2.java
test/jalview/bin/commandsTest2.argfile1
test/jalview/bin/commandsTest2.argfile2