JAL-4386 Added secondary structure providers check boxes in show
authorRenia Correya <rcorreya001@dundee.ac.uk>
Tue, 28 May 2024 10:13:00 +0000 (11:13 +0100)
committerRenia Correya <rcorreya001@dundee.ac.uk>
Tue, 28 May 2024 10:13:00 +0000 (11:13 +0100)
commitb3d82da0ff6f8695b23c3be9624b0ee4fe146e15
tree3fa9fe3dec48d57e09f1956f2456eaf99895ae5d
parentcefe98eaa808f8967692e1d57079289cda6c9bb3
JAL-4386 Added secondary structure providers check boxes in show
secondary structure menu. Implemented displaying of secondary structure
and consensus based on user selection. Added secondary structure
providers option in calculate window. Added provider label in pca panel
and tree panel for secondary structure similarity.
20 files changed:
resources/lang/Messages.properties
src/jalview/analysis/AAFrequency.java
src/jalview/analysis/AlignmentUtils.java
src/jalview/analysis/scoremodels/SecondaryStructureDistanceModel.java
src/jalview/api/AlignViewportI.java
src/jalview/datamodel/Alignment.java
src/jalview/datamodel/SequenceGroup.java
src/jalview/gui/AlignFrame.java
src/jalview/gui/AlignViewport.java
src/jalview/gui/CalculationChooser.java
src/jalview/gui/PCAPanel.java
src/jalview/gui/PopupMenu.java
src/jalview/gui/TreePanel.java
src/jalview/jbgui/GAlignFrame.java
src/jalview/project/Jalview2XML.java
src/jalview/renderer/AnnotationRenderer.java
src/jalview/renderer/ResidueShader.java
src/jalview/renderer/ResidueShaderI.java
src/jalview/viewmodel/AlignmentViewport.java
src/jalview/workers/SecondaryStructureConsensusThread.java