JAL-4124 matrix is saved in dataset, with forward references made from alignments
authorJames Procter <j.procter@dundee.ac.uk>
Fri, 1 Sep 2023 15:10:33 +0000 (16:10 +0100)
committerJames Procter <j.procter@dundee.ac.uk>
Fri, 1 Sep 2023 15:10:33 +0000 (16:10 +0100)
commitc1d8867e99833bcb9019aaebddfabb99dd852f66
treee862bad9e7739dee478f6f04a6091814105eb0c7
parent1730be35c0c3fda8f9c63f1fb6dcea7b5fb2ba35
JAL-4124 matrix is saved in dataset, with forward references made from alignments
32 files changed:
schemas/vamsas.xsd
src/jalview/datamodel/Alignment.java
src/jalview/project/Jalview2XML.java
src/jalview/renderer/ContactMapRenderer.java
src/jalview/xml/binding/jalview/AlcodonFrame.java
src/jalview/xml/binding/jalview/Annotation.java
src/jalview/xml/binding/jalview/AnnotationColourScheme.java
src/jalview/xml/binding/jalview/AnnotationElement.java
src/jalview/xml/binding/jalview/DoubleMatrix.java
src/jalview/xml/binding/jalview/DoubleVector.java
src/jalview/xml/binding/jalview/Feature.java
src/jalview/xml/binding/jalview/FeatureMatcher.java
src/jalview/xml/binding/jalview/FeatureMatcherSet.java
src/jalview/xml/binding/jalview/FilterBy.java
src/jalview/xml/binding/jalview/JalviewModel.java
src/jalview/xml/binding/jalview/JalviewUserColours.java
src/jalview/xml/binding/jalview/MapListType.java
src/jalview/xml/binding/jalview/MapOnAMatrixType.java
src/jalview/xml/binding/jalview/Mapping.java
src/jalview/xml/binding/jalview/MatrixType.java
src/jalview/xml/binding/jalview/NoValueColour.java
src/jalview/xml/binding/jalview/ObjectFactory.java
src/jalview/xml/binding/jalview/PcaDataType.java
src/jalview/xml/binding/jalview/Pdbentry.java
src/jalview/xml/binding/jalview/Property.java
src/jalview/xml/binding/jalview/Sequence.java
src/jalview/xml/binding/jalview/SequenceSet.java
src/jalview/xml/binding/jalview/SequenceType.java
src/jalview/xml/binding/jalview/ThresholdType.java
src/jalview/xml/binding/jalview/VAMSAS.java
src/jalview/xml/binding/jalview/WebServiceParameterSet.java
src/jalview/xml/binding/jalview/package-info.java