JAL-1632 JAL-2416 load score matrices from file, as float[][]
authorgmungoc <g.m.carstairs@dundee.ac.uk>
Mon, 13 Feb 2017 16:00:59 +0000 (16:00 +0000)
committergmungoc <g.m.carstairs@dundee.ac.uk>
Mon, 13 Feb 2017 16:00:59 +0000 (16:00 +0000)
commitc6e8e8ccd10f21698226ae37196cd9680e6804a0
tree7a11a415f70adcbaf7268f36eee4a25d983cad43
parent1750b2f1dcdb6e7de41d0ef7beda88dc3400afba
JAL-1632 JAL-2416 load score matrices from file, as float[][]
24 files changed:
resources/lang/Messages.properties
resources/lang/Messages_es.properties
resources/scoreModel/blosum62.scm [new file with mode: 0644]
resources/scoreModel/dna.scm [new file with mode: 0644]
resources/scoreModel/pam250.scm [new file with mode: 0644]
src/MCview/AppletPDBCanvas.java
src/MCview/PDBCanvas.java
src/jalview/analysis/AlignSeq.java
src/jalview/analysis/Conservation.java
src/jalview/analysis/NJTree.java
src/jalview/analysis/PCA.java
src/jalview/analysis/scoremodels/PairwiseSeqScoreModel.java
src/jalview/analysis/scoremodels/ScoreMatrix.java
src/jalview/analysis/scoremodels/ScoreModels.java
src/jalview/datamodel/BinarySequence.java
src/jalview/gui/PCAPanel.java
src/jalview/gui/TreeChooser.java
src/jalview/gui/TreePanel.java
src/jalview/schemes/Blosum62ColourScheme.java
src/jalview/schemes/ResidueProperties.java
src/jalview/structure/StructureSelectionManager.java
src/jalview/viewmodel/PCAModel.java
test/jalview/analysis/TestAlignSeq.java
test/jalview/analysis/scoremodels/ScoreMatrixTest.java [new file with mode: 0644]