JAL-2738 use GeneLocus extends DBRefEntry to hold chromosomal mappings
authorgmungoc <g.m.carstairs@dundee.ac.uk>
Wed, 6 Feb 2019 15:27:49 +0000 (15:27 +0000)
committergmungoc <g.m.carstairs@dundee.ac.uk>
Fri, 7 Jun 2019 13:14:06 +0000 (14:14 +0100)
commitcbeb7ad59d51b468c54ca3db2a2a7693060a2509
tree2559eccd00321b3981bf976bb5eae7a8a5c22882
parentb9ab9bc4482882a6bf21e39de829938bb086585b
JAL-2738 use GeneLocus extends DBRefEntry to hold chromosomal mappings
16 files changed:
schemas/vamsas.xsd
src/jalview/analysis/AlignmentUtils.java
src/jalview/datamodel/DBRefEntry.java
src/jalview/datamodel/GeneLociI.java
src/jalview/datamodel/GeneLocus.java [new file with mode: 0644]
src/jalview/datamodel/Sequence.java
src/jalview/ext/ensembl/EnsemblGene.java
src/jalview/ext/ensembl/EnsemblLookup.java
src/jalview/ext/ensembl/EnsemblMap.java
src/jalview/gui/CrossRefAction.java
src/jalview/io/SequenceAnnotationReport.java
src/jalview/io/vcf/VCFLoader.java
src/jalview/project/Jalview2XML.java
src/jalview/xml/binding/jalview/Sequence.java
test/jalview/analysis/AlignmentUtilsTests.java
test/jalview/project/Jalview2xmlTests.java