JAL-2388 Hidden cols separated from column selection (almost complete)
authorkiramt <k.mourao@dundee.ac.uk>
Mon, 24 Apr 2017 09:37:33 +0000 (10:37 +0100)
committerkiramt <k.mourao@dundee.ac.uk>
Mon, 24 Apr 2017 09:37:33 +0000 (10:37 +0100)
commitd1707d4c26db76cfeb640f0dbeb3e3427fd40eb7
tree364adcb5f84571cb076573904555c246976a0874
parent242fe71de915d94d6f73d790bb14e377bb9624d3
JAL-2388 Hidden cols separated from column selection (almost complete)
76 files changed:
src/jalview/api/ComplexAlignFile.java
src/jalview/appletgui/AlignFrame.java
src/jalview/appletgui/AlignViewport.java
src/jalview/appletgui/AlignmentPanel.java
src/jalview/appletgui/AnnotationColumnChooser.java
src/jalview/appletgui/AnnotationLabels.java
src/jalview/appletgui/AnnotationPanel.java
src/jalview/appletgui/CutAndPasteTransfer.java
src/jalview/appletgui/IdCanvas.java
src/jalview/appletgui/OverviewPanel.java
src/jalview/appletgui/PCAPanel.java
src/jalview/appletgui/ScalePanel.java
src/jalview/appletgui/SeqCanvas.java
src/jalview/appletgui/SeqPanel.java
src/jalview/appletgui/TreePanel.java
src/jalview/bin/JalviewLite.java
src/jalview/datamodel/Alignment.java
src/jalview/datamodel/AlignmentAnnotation.java
src/jalview/datamodel/AlignmentI.java
src/jalview/datamodel/AlignmentView.java
src/jalview/datamodel/CigarArray.java
src/jalview/datamodel/ColumnSelection.java
src/jalview/datamodel/HiddenColumns.java [new file with mode: 0644]
src/jalview/datamodel/SeqCigar.java
src/jalview/ext/jmol/JalviewJmolBinding.java
src/jalview/ext/jmol/JmolCommands.java
src/jalview/ext/rbvi/chimera/ChimeraCommands.java
src/jalview/ext/rbvi/chimera/JalviewChimeraBinding.java
src/jalview/gui/AlignFrame.java
src/jalview/gui/AlignViewport.java
src/jalview/gui/AlignmentPanel.java
src/jalview/gui/AnnotationColumnChooser.java
src/jalview/gui/AnnotationLabels.java
src/jalview/gui/AnnotationPanel.java
src/jalview/gui/AppVarna.java
src/jalview/gui/CutAndPasteTransfer.java
src/jalview/gui/IdCanvas.java
src/jalview/gui/Jalview2XML.java
src/jalview/gui/OverviewPanel.java
src/jalview/gui/PCAPanel.java
src/jalview/gui/PopupMenu.java
src/jalview/gui/ScalePanel.java
src/jalview/gui/SeqCanvas.java
src/jalview/gui/SeqPanel.java
src/jalview/gui/StructureViewerBase.java
src/jalview/gui/TreePanel.java
src/jalview/gui/VamsasApplication.java
src/jalview/io/AnnotationFile.java
src/jalview/io/FileLoader.java
src/jalview/io/FormatAdapter.java
src/jalview/io/HTMLOutput.java
src/jalview/io/HtmlFile.java
src/jalview/io/JSONFile.java
src/jalview/javascript/JsSelectionSender.java
src/jalview/renderer/AnnotationRenderer.java
src/jalview/renderer/ScaleRenderer.java
src/jalview/structure/SelectionListener.java
src/jalview/structure/StructureSelectionManager.java
src/jalview/structures/models/AAStructureBindingModel.java
src/jalview/util/MappingUtils.java
src/jalview/viewmodel/AlignmentViewport.java
src/jalview/viewmodel/OverviewDimensions.java
src/jalview/ws/jws1/JPredThread.java
src/jalview/ws/jws1/MsaWSThread.java
src/jalview/ws/jws2/MsaWSThread.java
src/jalview/ws/rest/RestClient.java
src/jalview/ws/rest/RestJobThread.java
test/jalview/analysis/DnaTest.java
test/jalview/datamodel/ColumnSelectionTest.java
test/jalview/datamodel/HiddenColumnsTest.java [new file with mode: 0644]
test/jalview/gui/AlignFrameTest.java
test/jalview/io/AnnotationFileIOTest.java
test/jalview/io/JSONFileTest.java
test/jalview/structures/models/AAStructureBindingModelTest.java
test/jalview/util/MappingUtilsTest.java
test/jalview/viewmodel/OverviewDimensionsTest.java