JAL-1712 fixes/tests for Castor binding and 'show flanking regions'
authorgmungoc <g.m.carstairs@dundee.ac.uk>
Tue, 12 May 2015 15:35:32 +0000 (16:35 +0100)
committergmungoc <g.m.carstairs@dundee.ac.uk>
Tue, 12 May 2015 15:35:32 +0000 (16:35 +0100)
commitd62b90cb6effb7b380e5f7d590691dd884b024cf
tree40f0991313ebfd1670a43d49e440a942f6ec4afa
parent2150df780eddbdf72013d29ee8eabb0f235c7bb4
JAL-1712 fixes/tests for Castor binding and 'show flanking regions'
27 files changed:
resources/embl_mapping.xml
src/jalview/analysis/AlignmentUtils.java
src/jalview/datamodel/AlignmentAnnotation.java
src/jalview/datamodel/PDBEntry.java
src/jalview/datamodel/Sequence.java
src/jalview/datamodel/SequenceI.java
src/jalview/datamodel/UniprotEntry.java
src/jalview/datamodel/UniprotFile.java
src/jalview/datamodel/UniprotProteinName.java
src/jalview/datamodel/UniprotSequence.java
src/jalview/datamodel/xdb/embl/BasePosition.java
src/jalview/datamodel/xdb/embl/EmblEntry.java
src/jalview/datamodel/xdb/embl/EmblError.java
src/jalview/datamodel/xdb/embl/EmblFeature.java
src/jalview/datamodel/xdb/embl/EmblFeatureLocElement.java
src/jalview/datamodel/xdb/embl/EmblFeatureLocations.java
src/jalview/datamodel/xdb/embl/EmblFile.java
src/jalview/datamodel/xdb/embl/EmblSequence.java
src/jalview/datamodel/xdb/embl/Qualifier.java
src/jalview/ws/dbsources/EmblXmlSource.java
src/jalview/ws/dbsources/Uniprot.java
src/jalview/ws/ebi/EBIFetchClient.java
test/jalview/analysis/AlignmentUtilsTests.java
test/jalview/datamodel/AlignmentAnnotationTests.java
test/jalview/datamodel/SequenceTest.java
test/jalview/datamodel/xdb/embl/EmblFileTest.java [new file with mode: 0644]
test/jalview/ws/dbsources/UniprotTest.java [new file with mode: 0644]