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(parent: c837249) | patch
JAL-1551 spotless
authorJim Procter <jprocter@dundee.ac.uk>
Thu, 15 Aug 2024 07:47:12 +0000 (08:47 +0100)
committerJim Procter <jprocter@dundee.ac.uk>
Thu, 15 Aug 2024 07:47:12 +0000 (08:47 +0100)
commite148ab3317ddf2a3d8db98c89cbe0c68aedd1b47
tree6d38ec3374e327eeb6f7f224da27fac6e0224ae7tree | snapshot
parentc837249215c60e866d1e54f2cc4aba649151396bcommit | diff
JAL-1551 spotless
113 files changed:
src/jalview/analysis/AAFrequency.java diff | blob | history
src/jalview/analysis/AlignSeq.java diff | blob | history
src/jalview/analysis/AlignmentAnnotationUtils.java diff | blob | history
src/jalview/analysis/AlignmentUtils.java diff | blob | history
src/jalview/analysis/ConnectivityException.java diff | blob | history
src/jalview/analysis/Finder.java diff | blob | history
src/jalview/analysis/PaSiMap.java diff | blob | history
src/jalview/analysis/TreeBuilder.java diff | blob | history
src/jalview/analysis/TreeModel.java diff | blob | history
src/jalview/analysis/ccAnalysis.java diff | blob | history
src/jalview/analysis/scoremodels/DistanceScoreModel.java diff | blob | history
src/jalview/analysis/scoremodels/FeatureDistanceModel.java diff | blob | history
src/jalview/analysis/scoremodels/ScoreModels.java diff | blob | history
src/jalview/analysis/scoremodels/SecondaryStructureDistanceModel.java diff | blob | history
src/jalview/analysis/scoremodels/SimilarityParams.java diff | blob | history
src/jalview/api/AlignViewControllerI.java diff | blob | history
src/jalview/api/AlignViewportI.java diff | blob | history
src/jalview/api/ViewStyleI.java diff | blob | history
src/jalview/api/analysis/ScoreModelI.java diff | blob | history
src/jalview/api/analysis/SimilarityParamsI.java diff | blob | history
src/jalview/appletgui/AlignFrame.java diff | blob | history
src/jalview/bin/Cache.java diff | blob | history
src/jalview/bin/JalviewLite.java diff | blob | history
src/jalview/commands/JustifyLeftOrRightCommand.java diff | blob | history
src/jalview/controller/AlignViewController.java diff | blob | history
src/jalview/datamodel/Alignment.java diff | blob | history
src/jalview/datamodel/AlignmentAnnotation.java diff | blob | history
src/jalview/datamodel/BinaryNode.java diff | blob | history
src/jalview/datamodel/PDBEntry.java diff | blob | history
src/jalview/datamodel/Profile.java diff | blob | history
src/jalview/datamodel/ProfileI.java diff | blob | history
src/jalview/datamodel/SecondaryStructureCount.java diff | blob | history
src/jalview/datamodel/SequenceGroup.java diff | blob | history
src/jalview/ext/jmol/JalviewJmolBinding.java diff | blob | history
src/jalview/gui/AlignFrame.java diff | blob | history
src/jalview/gui/AlignViewport.java diff | blob | history
src/jalview/gui/AnnotationLabels.java diff | blob | history
src/jalview/gui/AppJmol.java diff | blob | history
src/jalview/gui/CalculationChooser.java diff | blob | history
src/jalview/gui/CutAndPasteTransfer.java diff | blob | history
src/jalview/gui/Desktop.java diff | blob | history
src/jalview/gui/FontChooser.java diff | blob | history
src/jalview/gui/PCAPanel.java diff | blob | history
src/jalview/gui/PaSiMapPanel.java diff | blob | history
src/jalview/gui/PairwiseAlignPanel.java diff | blob | history
src/jalview/gui/PopupMenu.java diff | blob | history
src/jalview/gui/ProgressBar.java diff | blob | history
src/jalview/gui/RotatableCanvas.java diff | blob | history
src/jalview/gui/SeqPanel.java diff | blob | history
src/jalview/gui/SliderPanel.java diff | blob | history
src/jalview/gui/StructureChooser.java diff | blob | history
src/jalview/gui/TreeCanvas.java diff | blob | history
src/jalview/gui/TreePanel.java diff | blob | history
src/jalview/gui/structurechooser/ThreeDBStructureChooserQuerySource.java diff | blob | history
src/jalview/io/AnnotationFile.java diff | blob | history
src/jalview/jbgui/GAlignFrame.java diff | blob | history
src/jalview/jbgui/GCutAndPasteTransfer.java diff | blob | history
src/jalview/jbgui/GPCAPanel.java diff | blob | history
src/jalview/jbgui/GPaSiMapPanel.java diff | blob | history
src/jalview/jbgui/GPreferences.java diff | blob | history
src/jalview/math/Matrix.java diff | blob | history
src/jalview/math/MatrixI.java diff | blob | history
src/jalview/math/MiscMath.java diff | blob | history
src/jalview/project/Jalview2XML.java diff | blob | history
src/jalview/renderer/AnnotationRenderer.java diff | blob | history
src/jalview/renderer/ResidueShader.java diff | blob | history
src/jalview/renderer/ResidueShaderI.java diff | blob | history
src/jalview/schemes/ClustalxColourScheme.java diff | blob | history
src/jalview/schemes/ResidueProperties.java diff | blob | history
src/jalview/structure/StructureSelectionManager.java diff | blob | history
src/jalview/util/Constants.java diff | blob | history
src/jalview/viewmodel/AlignmentViewport.java diff | blob | history
src/jalview/viewmodel/PaSiMapModel.java diff | blob | history
src/jalview/viewmodel/styles/ViewStyle.java diff | blob | history
src/jalview/workers/SecondaryStructureConsensusThread.java diff | blob | history
src/jalview/xml/binding/jalview/AlcodonFrame.java diff | blob | history
src/jalview/xml/binding/jalview/Annotation.java diff | blob | history
src/jalview/xml/binding/jalview/AnnotationColourScheme.java diff | blob | history
src/jalview/xml/binding/jalview/AnnotationElement.java diff | blob | history
src/jalview/xml/binding/jalview/DoubleMatrix.java diff | blob | history
src/jalview/xml/binding/jalview/DoubleVector.java diff | blob | history
src/jalview/xml/binding/jalview/Feature.java diff | blob | history
src/jalview/xml/binding/jalview/FeatureMatcher.java diff | blob | history
src/jalview/xml/binding/jalview/FeatureMatcherSet.java diff | blob | history
src/jalview/xml/binding/jalview/FilterBy.java diff | blob | history
src/jalview/xml/binding/jalview/JalviewModel.java diff | blob | history
src/jalview/xml/binding/jalview/JalviewUserColours.java diff | blob | history
src/jalview/xml/binding/jalview/MapListType.java diff | blob | history
src/jalview/xml/binding/jalview/MapOnAMatrixType.java diff | blob | history
src/jalview/xml/binding/jalview/Mapping.java diff | blob | history
src/jalview/xml/binding/jalview/MatrixType.java diff | blob | history
src/jalview/xml/binding/jalview/NoValueColour.java diff | blob | history
src/jalview/xml/binding/jalview/ObjectFactory.java diff | blob | history
src/jalview/xml/binding/jalview/PcaDataType.java diff | blob | history
src/jalview/xml/binding/jalview/Pdbentry.java diff | blob | history
src/jalview/xml/binding/jalview/Property.java diff | blob | history
src/jalview/xml/binding/jalview/Sequence.java diff | blob | history
src/jalview/xml/binding/jalview/SequenceSet.java diff | blob | history
src/jalview/xml/binding/jalview/SequenceType.java diff | blob | history
src/jalview/xml/binding/jalview/ThresholdType.java diff | blob | history
src/jalview/xml/binding/jalview/VAMSAS.java diff | blob | history
src/jalview/xml/binding/jalview/WebServiceParameterSet.java diff | blob | history
src/jalview/xml/binding/jalview/package-info.java diff | blob | history
test/jalview/analysis/AlignSeqTest.java diff | blob | history
test/jalview/analysis/AlignmentUtilsTests.java diff | blob | history
test/jalview/analysis/scoremodels/ScoreModelsTest.java diff | blob | history
test/jalview/analysis/scoremodels/SecondaryStructureDistanceModelTest.java diff | blob | history
test/jalview/commands/EditCommandTest.java diff | blob | history
test/jalview/gui/AssociatePDBFileTest.java diff | blob | history
test/jalview/gui/CalculationChooserTest.java diff | blob | history
test/jalview/project/Jalview2xmlTests.java diff | blob | history
test/jalview/renderer/ResidueShaderTest.java diff | blob | history
test/jalview/schemes/ClustalxColourSchemeTest.java diff | blob | history