source.jalview.org Git - jalview.git/commit

git://source.jalview.org / jalview.git / commit

author	cmzmasek@gmail.com <cmzmasek@gmail.com@ca865154-3058-d1c3-3e42-d8f55a55bdbd>
	Sat, 23 Jun 2012 03:56:20 +0000 (03:56 +0000)
committer	cmzmasek@gmail.com <cmzmasek@gmail.com@ca865154-3058-d1c3-3e42-d8f55a55bdbd>
	Sat, 23 Jun 2012 03:56:20 +0000 (03:56 +0000)
commit	e174d62534f7fc6f3de133d523a402a87735b27f
tree	68ac1b84377ebbd6213a61a84c0f726cbc11a095	tree \| snapshot
parent	e9760b195d1eedcf55ddc4c9bbe0f8a15fc18d6a	commit \| diff

in progress

64 files changed:

forester/java/src/org/forester/analysis/TaxonomyDataManager.java		diff \| blob \| history
forester/java/src/org/forester/application/confadd.java		diff \| blob \| history
forester/java/src/org/forester/application/count_support.java		diff \| blob \| history
forester/java/src/org/forester/application/gene_tree_preprocess.java		diff \| blob \| history
forester/java/src/org/forester/application/gsdi.java		diff \| blob \| history
forester/java/src/org/forester/application/mcc.java		diff \| blob \| history
forester/java/src/org/forester/application/phyloxml_converter.java		diff \| blob \| history
forester/java/src/org/forester/application/surfacing.java		diff \| blob \| history
forester/java/src/org/forester/archaeopteryx/AptxUtil.java		diff \| blob \| history
forester/java/src/org/forester/archaeopteryx/MainFrameApplication.java		diff \| blob \| history
forester/java/src/org/forester/archaeopteryx/TreePanel.java		diff \| blob \| history
forester/java/src/org/forester/archaeopteryx/UrlTreeReader.java		diff \| blob \| history
forester/java/src/org/forester/archaeopteryx/tools/RunnableProcess.java		diff \| blob \| history
forester/java/src/org/forester/archaeopteryx/tools/SequenceDataRetriver.java		diff \| blob \| history
forester/java/src/org/forester/archaeopteryx/webservices/WebserviceUtil.java		diff \| blob \| history
forester/java/src/org/forester/development/DevelopmentTools.java		diff \| blob \| history
forester/java/src/org/forester/io/parsers/nhx/NHXParser.java		diff \| blob \| history
forester/java/src/org/forester/io/parsers/phyloxml/PhyloXmlDataFormatException.java		diff \| blob \| history
forester/java/src/org/forester/io/parsers/phyloxml/PhyloXmlHandler.java		diff \| blob \| history
forester/java/src/org/forester/io/parsers/phyloxml/XmlElement.java		diff \| blob \| history
forester/java/src/org/forester/io/parsers/phyloxml/data/AccessionParser.java		diff \| blob \| history
forester/java/src/org/forester/io/parsers/phyloxml/data/AnnotationParser.java		diff \| blob \| history
forester/java/src/org/forester/io/parsers/phyloxml/data/BinaryCharactersParser.java		diff \| blob \| history
forester/java/src/org/forester/io/parsers/phyloxml/data/BranchWidthParser.java		diff \| blob \| history
forester/java/src/org/forester/io/parsers/phyloxml/data/ColorParser.java		diff \| blob \| history
forester/java/src/org/forester/io/parsers/phyloxml/data/ConfidenceParser.java		diff \| blob \| history
forester/java/src/org/forester/io/parsers/phyloxml/data/DateParser.java		diff \| blob \| history
forester/java/src/org/forester/io/parsers/phyloxml/data/DistributionParser.java		diff \| blob \| history
forester/java/src/org/forester/io/parsers/phyloxml/data/DomainArchitectureParser.java		diff \| blob \| history
forester/java/src/org/forester/io/parsers/phyloxml/data/EventParser.java		diff \| blob \| history
forester/java/src/org/forester/io/parsers/phyloxml/data/IdentifierParser.java		diff \| blob \| history
forester/java/src/org/forester/io/parsers/phyloxml/data/PhylogenyDataPhyloXmlParser.java		diff \| blob \| history
forester/java/src/org/forester/io/parsers/phyloxml/data/PointParser.java		diff \| blob \| history
forester/java/src/org/forester/io/parsers/phyloxml/data/PolygonParser.java		diff \| blob \| history
forester/java/src/org/forester/io/parsers/phyloxml/data/PropertyParser.java		diff \| blob \| history
forester/java/src/org/forester/io/parsers/phyloxml/data/ProteinDomainParser.java		diff \| blob \| history
forester/java/src/org/forester/io/parsers/phyloxml/data/ReferenceParser.java		diff \| blob \| history
forester/java/src/org/forester/io/parsers/phyloxml/data/SequenceParser.java		diff \| blob \| history
forester/java/src/org/forester/io/parsers/phyloxml/data/SequenceRelationParser.java		diff \| blob \| history
forester/java/src/org/forester/io/parsers/phyloxml/data/TaxonomyParser.java		diff \| blob \| history
forester/java/src/org/forester/io/parsers/phyloxml/data/UriParser.java		diff \| blob \| history
forester/java/src/org/forester/io/parsers/util/ParserUtils.java		diff \| blob \| history
forester/java/src/org/forester/io/writers/PhylogenyWriter.java		diff \| blob \| history
forester/java/src/org/forester/phylogeny/Phylogeny.java		diff \| blob \| history
forester/java/src/org/forester/phylogeny/PhylogenyMethods.java		diff \| blob \| history
forester/java/src/org/forester/phylogeny/PhylogenyNode.java		diff \| blob \| history
forester/java/src/org/forester/phylogeny/data/Accession.java		diff \| blob \| history
forester/java/src/org/forester/phylogeny/data/Reference.java		diff \| blob \| history
forester/java/src/org/forester/phylogeny/data/Sequence.java		diff \| blob \| history
forester/java/src/org/forester/phylogeny/data/Taxonomy.java		diff \| blob \| history
forester/java/src/org/forester/sdi/GSDI.java		diff \| blob \| history
forester/java/src/org/forester/test/Test.java		diff \| blob \| history
forester/java/src/org/forester/tools/PhylogenyDecorator.java		diff \| blob \| history
forester/java/src/org/forester/util/EasyWriter.java		diff \| blob \| history
forester/java/src/org/forester/util/ForesterConstants.java		diff \| blob \| history
forester/java/src/org/forester/util/SequenceIdParser.java		diff \| blob \| history
forester/java/src/org/forester/ws/seqdb/DatabaseTools.java		diff \| blob \| history
forester/java/src/org/forester/ws/seqdb/EbiDbEntry.java		diff \| blob \| history
forester/java/src/org/forester/ws/seqdb/SequenceDatabaseEntry.java		diff \| blob \| history
forester/java/src/org/forester/ws/seqdb/SequenceDbWsTools.java		diff \| blob \| history
forester/java/src/org/forester/ws/uniprot/DatabaseTools.java		diff \| blob \| history
forester/java/src/org/forester/ws/uniprot/EbiDbEntry.java		diff \| blob \| history
forester/java/src/org/forester/ws/uniprot/SequenceDatabaseEntry.java		diff \| blob \| history
forester/java/src/org/forester/ws/uniprot/SequenceDbWsTools.java		diff \| blob \| history

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