source.jalview.org Git - jalview.git/commit

git://source.jalview.org / jalview.git / commit

author	tcofoegbu <tcnofoegbu@dundee.ac.uk>
	Tue, 28 Feb 2017 12:49:20 +0000 (12:49 +0000)
committer	tcofoegbu <tcnofoegbu@dundee.ac.uk>
	Tue, 28 Feb 2017 12:49:20 +0000 (12:49 +0000)
commit	e95ce7b42f95c193fc6ef5b6efb803d13dbac8b9
tree	7884a540df19f5bbaf5aa128dc2254fa831e4f77	tree \| snapshot
parent	d980f203d66517042c7d2707ec300c653cae1892	commit \| diff

JAL-2136 added improvement to parse crudelist file instead of scrapping 'summary.html' and renamed testfiles accordingly

65 files changed:

RSS Atom

examples/testdata/phyre2results/56da5616b4559c93/c1krhA_.1.fasta	[moved from examples/testdata/phyre2results/56da5616b4559c93/c1krhA_.fasta with 100% similarity]	blob \| history
examples/testdata/phyre2results/56da5616b4559c93/c1krhA_.1.pdb	[moved from examples/testdata/phyre2results/56da5616b4559c93/c1krhA_.pdb with 100% similarity]	blob \| history
examples/testdata/phyre2results/56da5616b4559c93/c1krhA_.16.scop	[moved from examples/testdata/phyre2results/56da5616b4559c93/c1krhA_.scop with 100% similarity]	blob \| history
examples/testdata/phyre2results/56da5616b4559c93/c2piaA_.20.fasta	[moved from examples/testdata/phyre2results/56da5616b4559c93/c2piaA_.fasta with 100% similarity]	blob \| history
examples/testdata/phyre2results/56da5616b4559c93/c2piaA_.20.pdb	[moved from examples/testdata/phyre2results/56da5616b4559c93/c2piaA_.pdb with 100% similarity]	blob \| history
examples/testdata/phyre2results/56da5616b4559c93/c2piaA_.20.scop	[moved from examples/testdata/phyre2results/56da5616b4559c93/c2piaA_.scop with 100% similarity]	blob \| history
examples/testdata/phyre2results/56da5616b4559c93/c4itkA_.15.fasta	[moved from examples/testdata/phyre2results/56da5616b4559c93/c4itkA_.fasta with 100% similarity]	blob \| history
examples/testdata/phyre2results/56da5616b4559c93/c4itkA_.15.pdb	[moved from examples/testdata/phyre2results/56da5616b4559c93/c4itkA_.pdb with 100% similarity]	blob \| history
examples/testdata/phyre2results/56da5616b4559c93/c4itkA_.15.scop	[moved from examples/testdata/phyre2results/56da5616b4559c93/c4itkA_.scop with 100% similarity]	blob \| history
examples/testdata/phyre2results/56da5616b4559c93/c4n58A_.1.fasta	[moved from examples/testdata/phyre2results/56da5616b4559c93/c4n58A_.fasta with 100% similarity]	blob \| history
examples/testdata/phyre2results/56da5616b4559c93/c4n58A_.1.pdb	[moved from examples/testdata/phyre2results/56da5616b4559c93/c4n58A_.pdb with 100% similarity]	blob \| history
examples/testdata/phyre2results/56da5616b4559c93/c4n58A_.1.scop	[moved from examples/testdata/phyre2results/56da5616b4559c93/c4n58A_.scop with 100% similarity]	blob \| history
examples/testdata/phyre2results/56da5616b4559c93/c4wqmA_.19.fasta	[moved from examples/testdata/phyre2results/56da5616b4559c93/c4wqmA_.fasta with 100% similarity]	blob \| history
examples/testdata/phyre2results/56da5616b4559c93/c4wqmA_.19.pdb	[moved from examples/testdata/phyre2results/56da5616b4559c93/c4wqmA_.pdb with 100% similarity]	blob \| history
examples/testdata/phyre2results/56da5616b4559c93/c4wqmA_.19.scop	[moved from examples/testdata/phyre2results/56da5616b4559c93/c4wqmA_.scop with 100% similarity]	blob \| history
examples/testdata/phyre2results/56da5616b4559c93/d1a70a_.2.fasta	[moved from examples/testdata/phyre2results/56da5616b4559c93/d1a70a_.fasta with 100% similarity]	blob \| history
examples/testdata/phyre2results/56da5616b4559c93/d1a70a_.2.pdb	[moved from examples/testdata/phyre2results/56da5616b4559c93/d1a70a_.pdb with 100% similarity]	blob \| history
examples/testdata/phyre2results/56da5616b4559c93/d1a70a_.2.scop	[moved from examples/testdata/phyre2results/56da5616b4559c93/d1a70a_.scop with 100% similarity]	blob \| history
examples/testdata/phyre2results/56da5616b4559c93/d1awda_.10.fasta	[moved from examples/testdata/phyre2results/56da5616b4559c93/d1awda_.fasta with 100% similarity]	blob \| history
examples/testdata/phyre2results/56da5616b4559c93/d1awda_.10.pdb	[moved from examples/testdata/phyre2results/56da5616b4559c93/d1awda_.pdb with 100% similarity]	blob \| history
examples/testdata/phyre2results/56da5616b4559c93/d1awda_.10.scop	[moved from examples/testdata/phyre2results/56da5616b4559c93/d1awda_.scop with 100% similarity]	blob \| history
examples/testdata/phyre2results/56da5616b4559c93/d1czpa_.12.fasta	[moved from examples/testdata/phyre2results/56da5616b4559c93/d1czpa_.fasta with 100% similarity]	blob \| history
examples/testdata/phyre2results/56da5616b4559c93/d1czpa_.12.pdb	[moved from examples/testdata/phyre2results/56da5616b4559c93/d1czpa_.pdb with 100% similarity]	blob \| history
examples/testdata/phyre2results/56da5616b4559c93/d1czpa_.12.scop	[moved from examples/testdata/phyre2results/56da5616b4559c93/d1czpa_.scop with 100% similarity]	blob \| history
examples/testdata/phyre2results/56da5616b4559c93/d1frda_.6.fasta	[moved from examples/testdata/phyre2results/56da5616b4559c93/d1frda_.fasta with 100% similarity]	blob \| history
examples/testdata/phyre2results/56da5616b4559c93/d1frda_.6.pdb	[moved from examples/testdata/phyre2results/56da5616b4559c93/d1frda_.pdb with 100% similarity]	blob \| history
examples/testdata/phyre2results/56da5616b4559c93/d1frda_.6.scop	[moved from examples/testdata/phyre2results/56da5616b4559c93/d1frda_.scop with 100% similarity]	blob \| history
examples/testdata/phyre2results/56da5616b4559c93/d1frra_.4.fasta	[moved from examples/testdata/phyre2results/56da5616b4559c93/d1frra_.fasta with 100% similarity]	blob \| history
examples/testdata/phyre2results/56da5616b4559c93/d1frra_.4.pdb	[moved from examples/testdata/phyre2results/56da5616b4559c93/d1frra_.pdb with 100% similarity]	blob \| history
examples/testdata/phyre2results/56da5616b4559c93/d1frra_.4.scop	[moved from examples/testdata/phyre2results/56da5616b4559c93/d1frra_.scop with 100% similarity]	blob \| history
examples/testdata/phyre2results/56da5616b4559c93/d1fxia_.7.fasta	[moved from examples/testdata/phyre2results/56da5616b4559c93/d1fxia_.fasta with 100% similarity]	blob \| history
examples/testdata/phyre2results/56da5616b4559c93/d1fxia_.7.pdb	[moved from examples/testdata/phyre2results/56da5616b4559c93/d1fxia_.pdb with 100% similarity]	blob \| history
examples/testdata/phyre2results/56da5616b4559c93/d1fxia_.7.scop	[moved from examples/testdata/phyre2results/56da5616b4559c93/d1fxia_.scop with 100% similarity]	blob \| history
examples/testdata/phyre2results/56da5616b4559c93/d1gaqb_.8.fasta	[moved from examples/testdata/phyre2results/56da5616b4559c93/d1gaqb_.fasta with 100% similarity]	blob \| history
examples/testdata/phyre2results/56da5616b4559c93/d1gaqb_.8.pdb	[moved from examples/testdata/phyre2results/56da5616b4559c93/d1gaqb_.pdb with 100% similarity]	blob \| history
examples/testdata/phyre2results/56da5616b4559c93/d1gaqb_.8.scop	[moved from examples/testdata/phyre2results/56da5616b4559c93/d1gaqb_.scop with 100% similarity]	blob \| history
examples/testdata/phyre2results/56da5616b4559c93/d1iuea_.9.fasta	[moved from examples/testdata/phyre2results/56da5616b4559c93/d1iuea_.fasta with 100% similarity]	blob \| history
examples/testdata/phyre2results/56da5616b4559c93/d1iuea_.9.pdb	[moved from examples/testdata/phyre2results/56da5616b4559c93/d1iuea_.pdb with 100% similarity]	blob \| history
examples/testdata/phyre2results/56da5616b4559c93/d1iuea_.9.scop	[moved from examples/testdata/phyre2results/56da5616b4559c93/d1iuea_.scop with 100% similarity]	blob \| history
examples/testdata/phyre2results/56da5616b4559c93/d1jq4a_.18.fasta	[moved from examples/testdata/phyre2results/56da5616b4559c93/d1jq4a_.fasta with 100% similarity]	blob \| history
examples/testdata/phyre2results/56da5616b4559c93/d1jq4a_.18.pdb	[moved from examples/testdata/phyre2results/56da5616b4559c93/d1jq4a_.pdb with 100% similarity]	blob \| history
examples/testdata/phyre2results/56da5616b4559c93/d1jq4a_.18.scop	[moved from examples/testdata/phyre2results/56da5616b4559c93/d1jq4a_.scop with 100% similarity]	blob \| history
examples/testdata/phyre2results/56da5616b4559c93/d1krha3.17.fasta	[moved from examples/testdata/phyre2results/56da5616b4559c93/d1krha3.fasta with 100% similarity]	blob \| history
examples/testdata/phyre2results/56da5616b4559c93/d1krha3.17.pdb	[moved from examples/testdata/phyre2results/56da5616b4559c93/d1krha3.pdb with 100% similarity]	blob \| history
examples/testdata/phyre2results/56da5616b4559c93/d1krha3.17.scop	[moved from examples/testdata/phyre2results/56da5616b4559c93/d1krha3.scop with 100% similarity]	blob \| history
examples/testdata/phyre2results/56da5616b4559c93/d1offa_.3.fasta	[moved from examples/testdata/phyre2results/56da5616b4559c93/d1offa_.fasta with 100% similarity]	blob \| history
examples/testdata/phyre2results/56da5616b4559c93/d1offa_.3.pdb	[moved from examples/testdata/phyre2results/56da5616b4559c93/d1offa_.pdb with 100% similarity]	blob \| history
examples/testdata/phyre2results/56da5616b4559c93/d1offa_.3.scop	[moved from examples/testdata/phyre2results/56da5616b4559c93/d1offa_.scop with 100% similarity]	blob \| history
examples/testdata/phyre2results/56da5616b4559c93/d1pfda_.5.fasta	[moved from examples/testdata/phyre2results/56da5616b4559c93/d1pfda_.fasta with 100% similarity]	blob \| history
examples/testdata/phyre2results/56da5616b4559c93/d1pfda_.5.pdb	[moved from examples/testdata/phyre2results/56da5616b4559c93/d1pfda_.pdb with 100% similarity]	blob \| history
examples/testdata/phyre2results/56da5616b4559c93/d1pfda_.5.scop	[moved from examples/testdata/phyre2results/56da5616b4559c93/d1pfda_.scop with 100% similarity]	blob \| history
examples/testdata/phyre2results/56da5616b4559c93/d1wria_.11.fasta	[moved from examples/testdata/phyre2results/56da5616b4559c93/d1wria_.fasta with 100% similarity]	blob \| history
examples/testdata/phyre2results/56da5616b4559c93/d1wria_.11.pdb	[moved from examples/testdata/phyre2results/56da5616b4559c93/d1wria_.pdb with 100% similarity]	blob \| history
examples/testdata/phyre2results/56da5616b4559c93/d1wria_.11.scop	[moved from examples/testdata/phyre2results/56da5616b4559c93/d1wria_.scop with 100% similarity]	blob \| history
examples/testdata/phyre2results/56da5616b4559c93/d2cjoa_.13.fasta	[moved from examples/testdata/phyre2results/56da5616b4559c93/d2cjoa_.fasta with 100% similarity]	blob \| history
examples/testdata/phyre2results/56da5616b4559c93/d2cjoa_.13.pdb	[moved from examples/testdata/phyre2results/56da5616b4559c93/d2cjoa_.pdb with 100% similarity]	blob \| history
examples/testdata/phyre2results/56da5616b4559c93/d2cjoa_.13.scop	[moved from examples/testdata/phyre2results/56da5616b4559c93/d2cjoa_.scop with 100% similarity]	blob \| history
examples/testdata/phyre2results/56da5616b4559c93/d4fxca_.14.fasta	[moved from examples/testdata/phyre2results/56da5616b4559c93/d4fxca_.fasta with 100% similarity]	blob \| history
examples/testdata/phyre2results/56da5616b4559c93/d4fxca_.14.pdb	[moved from examples/testdata/phyre2results/56da5616b4559c93/d4fxca_.pdb with 100% similarity]	blob \| history
examples/testdata/phyre2results/56da5616b4559c93/d4fxca_.14.scop	[moved from examples/testdata/phyre2results/56da5616b4559c93/d4fxca_.scop with 100% similarity]	blob \| history
src/jalview/gui/AppJmol.java		diff \| blob \| history
src/jalview/gui/StructureChooser.java		diff \| blob \| history
src/jalview/jbgui/GStructureChooser.java		diff \| blob \| history
src/jalview/ws/phyre2/Phyre2Client.java		diff \| blob \| history
test/jalview/ws/phyre2/Phyre2ClientTest.java		diff \| blob \| history