initial commit
authorcmzmasek@gmail.com <cmzmasek@gmail.com@ca865154-3058-d1c3-3e42-d8f55a55bdbd>
Wed, 9 Feb 2011 01:09:13 +0000 (01:09 +0000)
committercmzmasek@gmail.com <cmzmasek@gmail.com@ca865154-3058-d1c3-3e42-d8f55a55bdbd>
Wed, 9 Feb 2011 01:09:13 +0000 (01:09 +0000)
commiteccc2fdb674f76be1815fd7984295661bff8a2be
tree773f9d5e4b6716b57b4510a4dd071961238f2626
parent137b43795140cd52de2b3d5d4bbfdcc7a1c8200c
initial commit
19 files changed:
forester/java/src/org/forester/development/AbstractRenderer.java [new file with mode: 0644]
forester/java/src/org/forester/development/DevelopmentTools.java [new file with mode: 0644]
forester/java/src/org/forester/development/HmmerRest.java [new file with mode: 0644]
forester/java/src/org/forester/development/MsaRenderer.java [new file with mode: 0644]
forester/java/src/org/forester/development/RandomThing.java [new file with mode: 0644]
forester/java/src/org/forester/development/ResidueRenderer.java [new file with mode: 0644]
forester/java/src/org/forester/development/Test.java [new file with mode: 0644]
forester/java/src/org/forester/evoinference/TestPhylogenyReconstruction.java [new file with mode: 0644]
forester/java/src/org/forester/evoinference/distance/NeighborJoining.java [new file with mode: 0644]
forester/java/src/org/forester/evoinference/distance/PairwiseDistanceCalculator.java [new file with mode: 0644]
forester/java/src/org/forester/evoinference/matrix/character/BasicCharacterStateMatrix.java [new file with mode: 0644]
forester/java/src/org/forester/evoinference/matrix/character/CharacterStateMatrix.java [new file with mode: 0644]
forester/java/src/org/forester/evoinference/matrix/character/DiscreteState.java [new file with mode: 0644]
forester/java/src/org/forester/evoinference/matrix/distance/BasicSymmetricalDistanceMatrix.java [new file with mode: 0644]
forester/java/src/org/forester/evoinference/matrix/distance/DistanceMatrix.java [new file with mode: 0644]
forester/java/src/org/forester/evoinference/parsimony/DolloParsimony.java [new file with mode: 0644]
forester/java/src/org/forester/evoinference/parsimony/FitchParsimony.java [new file with mode: 0644]
forester/java/src/org/forester/evoinference/parsimony/SankoffParsimony.java [new file with mode: 0644]
forester/java/src/org/forester/evoinference/tools/BootstrapResampler.java [new file with mode: 0644]