JAL-2598 Sequence.getSequence return a copy of the char array
authorgmungoc <g.m.carstairs@dundee.ac.uk>
Wed, 14 Jun 2017 08:04:14 +0000 (09:04 +0100)
committergmungoc <g.m.carstairs@dundee.ac.uk>
Wed, 14 Jun 2017 08:04:14 +0000 (09:04 +0100)
commitff450fad8709ae81919af7a15ea382af7292794c
tree874dafdd39a2cc0f8de8c84b7aaccb965efb418a
parent45fa2a2d8465e302f895576a4c841578d2209cda
JAL-2598 Sequence.getSequence return a copy of the char array
29 files changed:
src/jalview/analysis/AAFrequency.java
src/jalview/analysis/AlignmentUtils.java
src/jalview/analysis/Conservation.java
src/jalview/analysis/CrossRef.java
src/jalview/datamodel/AlignedCodonFrame.java
src/jalview/datamodel/Alignment.java
src/jalview/datamodel/BinarySequence.java
src/jalview/datamodel/Mapping.java
src/jalview/datamodel/Sequence.java
src/jalview/datamodel/SequenceI.java
src/jalview/datamodel/xdb/embl/EmblEntry.java
src/jalview/ext/jmol/JmolParser.java
src/jalview/gui/AppVarna.java
src/jalview/io/BLCFile.java
src/jalview/io/ClustalFile.java
src/jalview/io/JnetAnnotationMaker.java
src/jalview/io/MSFfile.java
src/jalview/io/PfamFile.java
src/jalview/io/PhylipFile.java
src/jalview/io/PileUpfile.java
src/jalview/io/StockholmFile.java
src/jalview/io/StructureFile.java
src/jalview/schemes/ClustalxColourScheme.java
src/jalview/util/Comparison.java
src/jalview/ws/rest/params/SeqVector.java
test/jalview/datamodel/AlignmentTest.java
test/jalview/datamodel/SeqCigarTest.java
test/jalview/datamodel/SequenceTest.java
test/jalview/ext/paradise/TestAnnotate3D.java