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JAL-1807 Bob's first commit -- Applet loaded; needs image j2s/develop-bh
authorgmungoc <g.m.carstairs@dundee.ac.uk>
Tue, 21 Jul 2015 10:42:36 +0000 (11:42 +0100)
committergmungoc <g.m.carstairs@dundee.ac.uk>
Tue, 21 Jul 2015 10:42:36 +0000 (11:42 +0100)
commiteb40ed78f348375efcd74b5a683bdc2380b3bd61
tree2d72f4fc55185234bb0fe13acb245e467e063a9dtree | snapshot
parentc07eb2c5794833bd0241000d6844d783fe10cb82commit | diff
JAL-1807 Bob's first commit -- Applet loaded; needs image
277 files changed:
src/awt2swing/Button.java [new file with mode: 0644] blob
src/awt2swing/Canvas.java [new file with mode: 0644] blob
src/awt2swing/Checkbox.java [new file with mode: 0644] blob
src/awt2swing/CheckboxMenuItem.java [new file with mode: 0644] blob
src/awt2swing/Choice.java [new file with mode: 0644] blob
src/awt2swing/Frame.java [new file with mode: 0644] blob
src/awt2swing/Label.java [new file with mode: 0644] blob
src/awt2swing/Menu.java [new file with mode: 0644] blob
src/awt2swing/MenuBar.java [new file with mode: 0644] blob
src/awt2swing/MenuItem.java [new file with mode: 0644] blob
src/awt2swing/Panel.java [new file with mode: 0644] blob
src/awt2swing/PopupMenu.java [new file with mode: 0644] blob
src/awt2swing/ScrollPane.java [new file with mode: 0644] blob
src/awt2swing/Scrollbar.java [new file with mode: 0644] blob
src/awt2swing/TextArea.java [new file with mode: 0644] blob
src/awt2swing/TextField.java [new file with mode: 0644] blob
src/com/stevesoft/pat/BackRefRule.java diff | blob | history
src/com/stevesoft/pat/BasicStringBufferLike.java diff | blob | history
src/com/stevesoft/pat/CaseMgr.java diff | blob | history
src/com/stevesoft/pat/DirFileRegex.java diff | blob | history
src/com/stevesoft/pat/FileRegex.java diff | blob | history
src/com/stevesoft/pat/MessageManager.java [new file with mode: 0644] blob
src/com/stevesoft/pat/NonDirFileRegex.java diff | blob | history
src/com/stevesoft/pat/Pattern.java diff | blob | history
src/com/stevesoft/pat/RegRes.java diff | blob | history
src/com/stevesoft/pat/Regex.java diff | blob | history
src/com/stevesoft/pat/RegexReader.java diff | blob | history
src/com/stevesoft/pat/RegexTokenizer.java diff | blob | history
src/com/stevesoft/pat/RegexWriter.java diff | blob | history
src/com/stevesoft/pat/ReplaceRule.java diff | blob | history
src/com/stevesoft/pat/Replacer.java diff | blob | history
src/com/stevesoft/pat/Skip.java diff | blob | history
src/com/stevesoft/pat/Skip2.java diff | blob | history
src/com/stevesoft/pat/SkipBMH.java diff | blob | history
src/com/stevesoft/pat/StringBufferLike.java diff | blob | history
src/com/stevesoft/pat/Transformer.java diff | blob | history
src/com/stevesoft/pat/Util.java [new file with mode: 0644] blob
src/com/stevesoft/pat/Validator.java diff | blob | history
src/com/stevesoft/pat/oneChar.java diff | blob | history
src/com/stevesoft/pat/parsePerl.java diff | blob | history
src/com/stevesoft/pat/wrap/CharArrayBufferWrap.java diff | blob | history
src/com/stevesoft/pat/wrap/RandomAccessFileWrap.java diff | blob | history
src/com/stevesoft/pat/wrap/StringBufferWrap.java diff | blob | history
src/com/stevesoft/pat/wrap/WriterWrap.java diff | blob | history
src/fr/orsay/lri/varna/models/rna/RNA.java [new file with mode: 0644] blob
src/jalview/analysis/AAFrequency.java diff | blob | history
src/jalview/analysis/AlignmentAnnotationUtils.java diff | blob | history
src/jalview/analysis/AlignmentSorter.java diff | blob | history
src/jalview/analysis/Finder.java diff | blob | history
src/jalview/analysis/NJTree.java diff | blob | history
src/jalview/analysis/ParseProperties.java diff | blob | history
src/jalview/analysis/Rna.java diff | blob | history
src/jalview/analysis/StructureFrequency.java diff | blob | history
src/jalview/api/analysis/ViewBasedAnalysisI.java diff | blob | history
src/jalview/appletgui/APopupMenu.java diff | blob | history
src/jalview/appletgui/AlignFrame.java diff | blob | history
src/jalview/appletgui/AlignViewport.java diff | blob | history
src/jalview/appletgui/AlignmentPanel.java diff | blob | history
src/jalview/appletgui/AnnotationColourChooser.java diff | blob | history
src/jalview/appletgui/AnnotationColumnChooser.java diff | blob | history
src/jalview/appletgui/AnnotationLabels.java diff | blob | history
src/jalview/appletgui/AnnotationPanel.java diff | blob | history
src/jalview/appletgui/AnnotationRowFilter.java diff | blob | history
src/jalview/appletgui/AppletJmol.java diff | blob | history
src/jalview/appletgui/AppletJmolBinding.java diff | blob | history
src/jalview/appletgui/CutAndPasteTransfer.java diff | blob | history
src/jalview/appletgui/EditNameDialog.java diff | blob | history
src/jalview/appletgui/EmbmenuFrame.java diff | blob | history
src/jalview/appletgui/ExtJmol.java diff | blob | history
src/jalview/appletgui/FeatureColourChooser.java diff | blob | history
src/jalview/appletgui/FeatureRenderer.java diff | blob | history
src/jalview/appletgui/FeatureSettings.java diff | blob | history
src/jalview/appletgui/Finder.java diff | blob | history
src/jalview/appletgui/FontChooser.java diff | blob | history
src/jalview/appletgui/IdCanvas.java diff | blob | history
src/jalview/appletgui/IdPanel.java diff | blob | history
src/jalview/appletgui/IdwidthAdjuster.java diff | blob | history
src/jalview/appletgui/JVDialog.java diff | blob | history
src/jalview/appletgui/OverviewPanel.java diff | blob | history
src/jalview/appletgui/PCAPanel.java diff | blob | history
src/jalview/appletgui/PairwiseAlignPanel.java diff | blob | history
src/jalview/appletgui/RedundancyPanel.java diff | blob | history
src/jalview/appletgui/RotatableCanvas.java diff | blob | history
src/jalview/appletgui/ScalePanel.java diff | blob | history
src/jalview/appletgui/SeqCanvas.java diff | blob | history
src/jalview/appletgui/SeqPanel.java diff | blob | history
src/jalview/appletgui/SliderPanel.java diff | blob | history
src/jalview/appletgui/SplitFrame.java diff | blob | history
src/jalview/appletgui/TitledPanel.java diff | blob | history
src/jalview/appletgui/Tooltip.java diff | blob | history
src/jalview/appletgui/TreeCanvas.java diff | blob | history
src/jalview/appletgui/TreePanel.java diff | blob | history
src/jalview/appletgui/UserDefinedColours.java diff | blob | history
src/jalview/bin/Cache.java diff | blob | history
src/jalview/bin/JalviewLite.java diff | blob | history
src/jalview/commands/EditCommand.java diff | blob | history
src/jalview/datamodel/Alignment.java diff | blob | history
src/jalview/datamodel/AlignmentView.java diff | blob | history
src/jalview/datamodel/CigarBase.java diff | blob | history
src/jalview/datamodel/Sequence.java diff | blob | history
src/jalview/datamodel/SequenceI.java diff | blob | history
src/jalview/io/AlignmentProperties.java diff | blob | history
src/jalview/io/AnnotationFile.java diff | blob | history
src/jalview/io/AppletFormatAdapter.java diff | blob | history
src/jalview/io/FastaFile.java diff | blob | history
src/jalview/io/FeaturesFile.java diff | blob | history
src/jalview/io/FileParse.java diff | blob | history
src/jalview/io/IdentifyFile.java diff | blob | history
src/jalview/io/JnetAnnotationMaker.java diff | blob | history
src/jalview/io/ModellerDescription.java diff | blob | history
src/jalview/io/NewickFile.java diff | blob | history
src/jalview/javascript/JSFunctionExec.java diff | blob | history
src/jalview/javascript/JsSelectionSender.java diff | blob | history
src/jalview/jsdev/Constants.java [new file with mode: 0644] blob
src/jalview/jsdev/GenericFileAdapter.java [new file with mode: 0644] blob
src/jalview/jsdev/JSRegex.java [new file with mode: 0644] blob
src/jalview/jsdev/JavaScriptRegExp.java [new file with mode: 0644] blob
src/jalview/jsdev/RegExp.java [new file with mode: 0644] blob
src/jalview/jsdev/api/RegExpInterface.java [new file with mode: 0644] blob
src/jalview/jsdev/api/VarnaRNA.java [new file with mode: 0644] blob
src/jalview/math/Matrix.java diff | blob | history
src/jalview/math/RotatableMatrix.java diff | blob | history
src/jalview/renderer/AnnotationRenderer.java diff | blob | history
src/jalview/schemes/AnnotationColourGradient.java diff | blob | history
src/jalview/schemes/ResidueProperties.java diff | blob | history
src/jalview/schemes/TCoffeeColourScheme.java diff | blob | history
src/jalview/structures/models/AAStructureBindingModel.java diff | blob | history
src/jalview/util/AWTConsole.java diff | blob | history
src/jalview/util/Comparison.java diff | blob | history
src/jalview/util/DBRefUtils.java diff | blob | history
src/jalview/util/GroupUrlLink.java diff | blob | history
src/jalview/util/MessageManager.java diff | blob | history
src/jalview/util/QuickSort.java diff | blob | history
src/jalview/util/UrlLink.java diff | blob | history
src/jalview/viewmodel/seqfeatures/FeatureRendererModel.java diff | blob | history
src/jalview/workers/ConsensusThread.java diff | blob | history
src/javajs/J2SIgnoreImport.java [new file with mode: 0644] blob
src/javajs/J2SRequireImport.java [new file with mode: 0644] blob
src/javajs/api/BytePoster.java [new file with mode: 0644] blob
src/javajs/api/EigenInterface.java [new file with mode: 0644] blob
src/javajs/api/EventManager.java [new file with mode: 0644] blob
src/javajs/api/FontManager.java [new file with mode: 0644] blob
src/javajs/api/GenericBinaryDocument.java [new file with mode: 0644] blob
src/javajs/api/GenericCifDataParser.java [new file with mode: 0644] blob
src/javajs/api/GenericColor.java [new file with mode: 0644] blob
src/javajs/api/GenericFileInterface.java [new file with mode: 0644] blob
src/javajs/api/GenericImageDialog.java [new file with mode: 0644] blob
src/javajs/api/GenericImageEncoder.java [new file with mode: 0644] blob
src/javajs/api/GenericLineReader.java [new file with mode: 0644] blob
src/javajs/api/GenericMenuInterface.java [new file with mode: 0644] blob
src/javajs/api/GenericMouseInterface.java [new file with mode: 0644] blob
src/javajs/api/GenericPlatform.java [new file with mode: 0644] blob
src/javajs/api/GenericZipInputStream.java [new file with mode: 0644] blob
src/javajs/api/GenericZipTools.java [new file with mode: 0644] blob
src/javajs/api/HTMLElement.java [new file with mode: 0644] blob
src/javajs/api/HTMLWindowEvent.java [new file with mode: 0644] blob
src/javajs/api/Interface.java [new file with mode: 0644] blob
src/javajs/api/JSInterface.java [new file with mode: 0644] blob
src/javajs/api/JSONEncodable.java [new file with mode: 0644] blob
src/javajs/api/JmolObjectInterface.java [new file with mode: 0644] blob
src/javajs/api/PlatformViewer.java [new file with mode: 0644] blob
src/javajs/api/SC.java [new file with mode: 0644] blob
src/javajs/api/SwingController.java [new file with mode: 0644] blob
src/javajs/api/ZInputStream.java [new file with mode: 0644] blob
src/javajs/awt/BorderLayout.java [new file with mode: 0644] blob
src/javajs/awt/Color.java [new file with mode: 0644] blob
src/javajs/awt/Component.java [new file with mode: 0644] blob
src/javajs/awt/Container.java [new file with mode: 0644] blob
src/javajs/awt/Dimension.java [new file with mode: 0644] blob
src/javajs/awt/Font.java [new file with mode: 0644] blob
src/javajs/awt/LayoutManager.java [new file with mode: 0644] blob
src/javajs/awt/event/ActionEvent.java [new file with mode: 0644] blob
src/javajs/awt/event/ActionListener.java [new file with mode: 0644] blob
src/javajs/awt/event/Event.java [new file with mode: 0644] blob
src/javajs/awt/event/ItemEvent.java [new file with mode: 0644] blob
src/javajs/awt/event/WindowEvent.java [new file with mode: 0644] blob
src/javajs/awt/event/WindowListener.java [new file with mode: 0644] blob
src/javajs/export/PDFCreator.java [new file with mode: 0644] blob
src/javajs/export/PDFObject.java [new file with mode: 0644] blob
src/javajs/img/BMPDecoder.java [new file with mode: 0644] blob
src/javajs/img/CRCEncoder.java [new file with mode: 0644] blob
src/javajs/img/GifEncoder.java [new file with mode: 0644] blob
src/javajs/img/ImageEncoder.java [new file with mode: 0644] blob
src/javajs/img/Jpg64Encoder.java [new file with mode: 0644] blob
src/javajs/img/JpgEncoder.java [new file with mode: 0644] blob
src/javajs/img/PdfEncoder.java [new file with mode: 0644] blob
src/javajs/img/PngEncoder.java [new file with mode: 0644] blob
src/javajs/img/PpmEncoder.java [new file with mode: 0644] blob
src/javajs/swing/AbstractButton.java [new file with mode: 0644] blob
src/javajs/swing/AbstractTableModel.java [new file with mode: 0644] blob
src/javajs/swing/ButtonGroup.java [new file with mode: 0644] blob
src/javajs/swing/Cell.java [new file with mode: 0644] blob
src/javajs/swing/ColumnSelectionModel.java [new file with mode: 0644] blob
src/javajs/swing/Document.java [new file with mode: 0644] blob
src/javajs/swing/FlowLayout.java [new file with mode: 0644] blob
src/javajs/swing/Grid.java [new file with mode: 0644] blob
src/javajs/swing/GridBagConstraints.java [new file with mode: 0644] blob
src/javajs/swing/GridBagLayout.java [new file with mode: 0644] blob
src/javajs/swing/Insets.java [new file with mode: 0644] blob
src/javajs/swing/JButton.java [new file with mode: 0644] blob
src/javajs/swing/JCheckBox.java [new file with mode: 0644] blob
src/javajs/swing/JCheckBoxMenuItem.java [new file with mode: 0644] blob
src/javajs/swing/JComboBox.java [new file with mode: 0644] blob
src/javajs/swing/JComponent.java [new file with mode: 0644] blob
src/javajs/swing/JComponentImp.java [new file with mode: 0644] blob
src/javajs/swing/JContentPane.java [new file with mode: 0644] blob
src/javajs/swing/JDialog.java [new file with mode: 0644] blob
src/javajs/swing/JEditorPane.java [new file with mode: 0644] blob
src/javajs/swing/JLabel.java [new file with mode: 0644] blob
src/javajs/swing/JMenu.java [new file with mode: 0644] blob
src/javajs/swing/JMenuItem.java [new file with mode: 0644] blob
src/javajs/swing/JPanel.java [new file with mode: 0644] blob
src/javajs/swing/JPopupMenu.java [new file with mode: 0644] blob
src/javajs/swing/JRadioButtonMenuItem.java [new file with mode: 0644] blob
src/javajs/swing/JScrollPane.java [new file with mode: 0644] blob
src/javajs/swing/JSplitPane.java [new file with mode: 0644] blob
src/javajs/swing/JTable.java [new file with mode: 0644] blob
src/javajs/swing/JTextField.java [new file with mode: 0644] blob
src/javajs/swing/JTextPane.java [new file with mode: 0644] blob
src/javajs/swing/ListSelectionModel.java [new file with mode: 0644] blob
src/javajs/swing/SwingConstants.java [new file with mode: 0644] blob
src/javajs/swing/TableCellRenderer.java [new file with mode: 0644] blob
src/javajs/swing/TableColumn.java [new file with mode: 0644] blob
src/javajs/util/A4.java [new file with mode: 0644] blob
src/javajs/util/AU.java [new file with mode: 0644] blob
src/javajs/util/AjaxURLConnection.java [new file with mode: 0644] blob
src/javajs/util/AjaxURLStreamHandler.java [new file with mode: 0644] blob
src/javajs/util/AjaxURLStreamHandlerFactory.java [new file with mode: 0644] blob
src/javajs/util/ArrayDataReader.java [new file with mode: 0644] blob
src/javajs/util/BArray.java [new file with mode: 0644] blob
src/javajs/util/BC.java [new file with mode: 0644] blob
src/javajs/util/BS.java [new file with mode: 0644] blob
src/javajs/util/Base64.java [new file with mode: 0644] blob
src/javajs/util/BinaryDocument.java [new file with mode: 0644] blob
src/javajs/util/CU.java [new file with mode: 0644] blob
src/javajs/util/CifDataParser.java [new file with mode: 0644] blob
src/javajs/util/CompoundDocDirEntry.java [new file with mode: 0644] blob
src/javajs/util/CompoundDocHeader.java [new file with mode: 0644] blob
src/javajs/util/CompoundDocument.java [new file with mode: 0644] blob
src/javajs/util/DF.java [new file with mode: 0644] blob
src/javajs/util/DataReader.java [new file with mode: 0644] blob
src/javajs/util/Eigen.java [new file with mode: 0644] blob
src/javajs/util/Encoding.java [new file with mode: 0644] blob
src/javajs/util/LimitedLineReader.java [new file with mode: 0644] blob
src/javajs/util/ListDataReader.java [new file with mode: 0644] blob
src/javajs/util/Lst.java [new file with mode: 0644] blob
src/javajs/util/M3.java [new file with mode: 0644] blob
src/javajs/util/M34.java [new file with mode: 0644] blob
src/javajs/util/M4.java [new file with mode: 0644] blob
src/javajs/util/Matrix.java [new file with mode: 0644] blob
src/javajs/util/Measure.java [new file with mode: 0644] blob
src/javajs/util/OC.java [new file with mode: 0644] blob
src/javajs/util/P3.java [new file with mode: 0644] blob
src/javajs/util/P3i.java [new file with mode: 0644] blob
src/javajs/util/P4.java [new file with mode: 0644] blob
src/javajs/util/PT.java [new file with mode: 0644] blob
src/javajs/util/Quat.java [new file with mode: 0644] blob
src/javajs/util/Rdr.java [new file with mode: 0644] blob
src/javajs/util/SB.java [new file with mode: 0644] blob
src/javajs/util/StringDataReader.java [new file with mode: 0644] blob
src/javajs/util/T3.java [new file with mode: 0644] blob
src/javajs/util/T3d.java [new file with mode: 0644] blob
src/javajs/util/T3i.java [new file with mode: 0644] blob
src/javajs/util/T4.java [new file with mode: 0644] blob
src/javajs/util/V3.java [new file with mode: 0644] blob
src/javajs/util/V3d.java [new file with mode: 0644] blob
src/javajs/util/XmlUtil.java [new file with mode: 0644] blob
src/javajs/util/ZipData.java [new file with mode: 0644] blob
src/javajs/util/ZipTools.java [new file with mode: 0644] blob
src/netscape/javascript/JSException.java [new file with mode: 0644] blob
src/netscape/javascript/JSObject.java [new file with mode: 0644] blob
src/org/exolab/castor/mapping/Mapping.java [new file with mode: 0644] blob
src/org/exolab/castor/xml/Unmarshaller.java [new file with mode: 0644] blob
src/org/jmol/viewer/Viewer.java [new file with mode: 0644] blob
src/swingjs/JSEvent.java [new file with mode: 0644] blob
src/swingjs/JSThread.java [new file with mode: 0644] blob
src/swingjs/api/JSFunction.java [new file with mode: 0644] blob