+ public void testConstructor()
+ {
+ SequenceFeaturesI store = new SequenceFeatures();
+ assertFalse(store.hasFeatures());
+
+ store = new SequenceFeatures((List<SequenceFeature>) null);
+ assertFalse(store.hasFeatures());
+
+ List<SequenceFeature> features = new ArrayList<>();
+ store = new SequenceFeatures(features);
+ assertFalse(store.hasFeatures());
+
+ SequenceFeature sf1 = new SequenceFeature("Metal", "desc", 10, 20,
+ Float.NaN, null);
+ features.add(sf1);
+ SequenceFeature sf2 = new SequenceFeature("Metal", "desc", 15, 18,
+ Float.NaN, null);
+ features.add(sf2); // nested
+ SequenceFeature sf3 = new SequenceFeature("Pfam", "desc2", 0, 0,
+ Float.NaN, null); // non-positional
+ features.add(sf3);
+ store = new SequenceFeatures(features);
+ assertTrue(store.hasFeatures());
+ assertEquals(2, store.getFeatureCount(true)); // positional
+ assertEquals(1, store.getFeatureCount(false)); // non-positional
+ assertFalse(store.add(sf1)); // already contained
+ assertFalse(store.add(sf2)); // already contained
+ assertFalse(store.add(sf3)); // already contained
+ }
+
+ @Test(groups = "Functional")