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2.06
author
amwaterhouse
<Andrew Waterhouse>
Wed, 28 Sep 2005 15:08:50 +0000
(15:08 +0000)
committer
amwaterhouse
<Andrew Waterhouse>
Wed, 28 Sep 2005 15:08:50 +0000
(15:08 +0000)
help/html/whatsNew.html
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help/html/whatsNew.html
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help/html/whatsNew.html
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<p>If you were familiar with the original Jalview, here is a list of important
\r
features you should know about the current development:</p>
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<ul>
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<p>If you were familiar with the original Jalview, here is a list of important
\r
features you should know about the current development:</p>
\r
<ul>
\r
- <li>Editing sequences is no longer the default when mouse clicking the alignment.
\r
- Instead, mouse clicking on the alignment creates a "selection region"
\r
+ <li>Editing sequences is no longer the default when mouse clicking the alignment.
\r
+ Instead, mouse clicking on the alignment creates a "selection region"
\r
which may be full sequences or groups of residues.</li>
\r
which may be full sequences or groups of residues.</li>
\r
- <li>To insert or edit the gaps in one sequence in alignment, the "Shift"
\r
+ <li>To insert or edit the gaps in one sequence in alignment, the "Shift"
\r
key must be held down when dragging the mouse.</li>
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key must be held down when dragging the mouse.</li>
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- <li>To insert or edit gaps for a group of sequences, the "Alt" key
\r
+ <li>To insert or edit gaps for a group of sequences, the "Alt" key
\r
(or in X windows the "Control" key) must be held down.</li>
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(or in X windows the "Control" key) must be held down.</li>
\r
- <li>Selecting colour schemes in the colour menu either sets just the "background"
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- colourscheme for the alignment, or - when the tickbox "Apply colour to
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- all groups" is ticked, applies the scheme to the background and all groups
\r
+ <li>Selecting colour schemes in the colour menu either sets just the "background"
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+ colourscheme for the alignment, or - when the tickbox "Apply colour to
\r
+ all groups" is ticked, applies the scheme to the background and all groups
\r
defined on the alignment.</li>
\r
defined on the alignment.</li>
\r
- <li>Use the right mouse button (apple and click on the Mac) whilst the pointer
\r
- is within the selection area to access the "define" region menu
\r
- to define a new region, give it a name, and change its colourscheme and display
\r
+ <li>Use the right mouse button (apple and click on the Mac) whilst the pointer
\r
+ is within the selection area to access the "define" region menu
\r
+ to define a new region, give it a name, and change its colourscheme and display
\r
properties.</li>
\r
<li>Conservation is automatically updated whenever the alignment is edited</li>
\r
<li>There is no "quick draw" option</li>
\r
<li>Edits can be undone, and redone!</li>
\r
</ul>
\r
<table border="1">
\r
properties.</li>
\r
<li>Conservation is automatically updated whenever the alignment is edited</li>
\r
<li>There is no "quick draw" option</li>
\r
<li>Edits can be undone, and redone!</li>
\r
</ul>
\r
<table border="1">
\r
- <tr>
\r
+ <tr>
\r
<td><div align="center"><em><strong>Release</strong></em></div></td>
\r
<td><div align="center"><em><strong>New Features</strong></em></div></td>
\r
<td><div align="center"><em><strong>Issues Resolved</strong></em></div></td>
\r
</tr>
\r
<tr>
\r
<td><div align="center"><em><strong>Release</strong></em></div></td>
\r
<td><div align="center"><em><strong>New Features</strong></em></div></td>
\r
<td><div align="center"><em><strong>Issues Resolved</strong></em></div></td>
\r
</tr>
\r
<tr>
\r
+ <td><div align="center"><strong>2.06</strong><br>
\r
+ 28/9/05</div></td>
\r
+ <td><ul>
\r
+ <li>View annotations in wrapped mode</li>
\r
+ <li>More options for PCA viewer</li>
\r
+ </ul></td>
\r
+ <td><ul>
\r
+ <li>GUI bugs resolved</li>
\r
+ <li>Runs with -nodisplay from command line</li>
\r
+ </ul></td>
\r
+ </tr>
\r
+ <tr>
\r
<td><div align="center"><strong>2.05b</strong><br>
\r
15/9/05</div></td>
\r
<td><ul>
\r
<td><div align="center"><strong>2.05b</strong><br>
\r
15/9/05</div></td>
\r
<td><ul>
\r
@@
-50,7
+62,7
@@
<li>Several GUI bugs resolved</li>
\r
</ul></td>
\r
</tr>
\r
<li>Several GUI bugs resolved</li>
\r
</ul></td>
\r
</tr>
\r
- <tr>
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+ <tr>
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<td><div align="center"><strong>2.05</strong><br>
\r
30/8/05</div></td>
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<td><ul>
\r
<td><div align="center"><strong>2.05</strong><br>
\r
30/8/05</div></td>
\r
<td><ul>
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@@
-60,7
+72,7
@@
<li>Several GUI bugs resolved</li>
\r
</ul></td>
\r
</tr>
\r
<li>Several GUI bugs resolved</li>
\r
</ul></td>
\r
</tr>
\r
- <tr>
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+ <tr>
\r
<td><div align="center"><strong>2.04</strong><br>
\r
24/8/05</div></td>
\r
<td><ul>
\r
<td><div align="center"><strong>2.04</strong><br>
\r
24/8/05</div></td>
\r
<td><ul>
\r
@@
-71,7
+83,7
@@
<li>Improved loading of Jalview files</li>
\r
</ul></td>
\r
</tr>
\r
<li>Improved loading of Jalview files</li>
\r
</ul></td>
\r
</tr>
\r
- <tr>
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+ <tr>
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<td> <div align="center"><strong>2.03</strong><br>
\r
18/8/05</div></td>
\r
<td><ul>
\r
<td> <div align="center"><strong>2.03</strong><br>
\r
18/8/05</div></td>
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<td><ul>
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@@
-87,7
+99,7
@@
<li>InstallAnywhere download for Sparc Solaris</li>
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</ul></td>
\r
</tr>
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<li>InstallAnywhere download for Sparc Solaris</li>
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</ul></td>
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</tr>
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- <tr>
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+ <tr>
\r
<td> <div align="center"><strong>2.02</strong><br>
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18/7/05</div></td>
\r
<td> </td>
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<td> <div align="center"><strong>2.02</strong><br>
\r
18/7/05</div></td>
\r
<td> </td>
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@@
-95,7
+107,7
@@
<li>Copy & Paste order of sequences maintains alignment order.</li>
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</ul></td>
\r
</tr>
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<li>Copy & Paste order of sequences maintains alignment order.</li>
\r
</ul></td>
\r
</tr>
\r
- <tr>
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+ <tr>
\r
<td><div align="center"><strong>2.01</strong><br>
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12/7/05</div></td>
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<td><ul>
\r
<td><div align="center"><strong>2.01</strong><br>
\r
12/7/05</div></td>
\r
<td><ul>
\r
@@
-110,12
+122,12
@@
<li>FileChooser sorts columns.</li>
\r
<li>Can remove groups one by one.</li>
\r
<li>Filechooser icons installed.</li>
\r
<li>FileChooser sorts columns.</li>
\r
<li>Can remove groups one by one.</li>
\r
<li>Filechooser icons installed.</li>
\r
- <li>Finder ignores return character when searching. Return key will initiate
\r
+ <li>Finder ignores return character when searching. Return key will initiate
\r
a search.<br>
\r
</li>
\r
</ul></td>
\r
</tr>
\r
a search.<br>
\r
</li>
\r
</ul></td>
\r
</tr>
\r
- <tr>
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+ <tr>
\r
<td> <div align="center"><strong>2.0</strong><br>
\r
20/6/05</div></td>
\r
<td ><ul>
\r
<td> <div align="center"><strong>2.0</strong><br>
\r
20/6/05</div></td>
\r
<td ><ul>
\r