-## Issues Resolved
-JAL-3776 Cancelling interactive calculation leaves empty progress bar.
-JAL-3772 Unsaved Alignment windows close without prompting to save, individually or at application quit.
-JAL-1988 Can quit Jalview while 'save project' is in progress
+- <!-- JAL-4019 --> Ambiguous Base Colourscheme
+- <!-- JAL-4061 --> Find can search sequence features' type and description
+- <!-- JAL-4062 --> Hold down Shift + CMD/CTRL C to copy highlighted regions as new sequences
+- <!-- JAL-4089 --> Use selected columns for superposition
+- <!-- JAL-4086 --> Highlight aligned positions on all associated structures when mousing over a column
+
+- <!-- JAL-3895 --> Alphafold red/orange/yellow/green colourscheme for structures
+- <!-- JAL-4095 --> Interactive picking of low pAE score regions
+- <!-- JAL-4027 --> contact matrix datatype in Jalview
+- <!-- JAL-4033 --> Selections with visual feedback via contact matrix annotation
+
+- <!-- JAL-4075 --> Don't add string label version of DSSP secondary structure codes in secondary structure annotation rows
+- <!-- JAL-3855 --> Discover and import alphafold2 models and metadata from https://alphafold.ebi.ac.uk/
+
+- <!-- JAL-2961 --> Jmol view not always centred on structures when multiple structures are viewed
+
+- <!-- JAL-2528, JAL-1713 --> Overview window is saved in project file, and state of 'show hidden regions' is preserved.
+
+- <!-- JAL-3119 --> Name of alignment and view included in overview window's title
+
+- <!-- JAL-4091 --> Visual indication of relationship with associated sequence to distinguish different sequence associated annotation rows
+- <!-- JAL-4094 --> Shift+Click+Drag to adjust height of all annotation tracks of same type