- * generate a features file for seqs includes non-pos features by default.
- *
- * @param sequences
- * source of sequence features
- * @param visible
- * hash of feature types and colours
- * @return features file contents
- */
- public String printJalviewFormat(SequenceI[] sequences,
- Map<String, FeatureColourI> visible)
- {
- return printJalviewFormat(sequences, visible, true, true);
- }
-
- /**
- * generate a features file for seqs with colours from visible (if any)