git://source.jalview.org
/
jalview.git
/ commitdiff
commit
grep
author
committer
pickaxe
?
search:
re
summary
|
shortlog
|
log
|
commit
| commitdiff |
tree
raw
|
patch
|
inline
| side by side (from parent 1:
ea11295
)
fix case when groups overlap - ensure groups are non-empty and always add up to lengt...
author
jprocter
<Jim Procter>
Thu, 9 Dec 2010 17:34:45 +0000
(17:34 +0000)
committer
jprocter
<Jim Procter>
Thu, 9 Dec 2010 17:34:45 +0000
(17:34 +0000)
src/jalview/ws/rest/params/SeqGroupIndexVector.java
patch
|
blob
|
history
diff --git
a/src/jalview/ws/rest/params/SeqGroupIndexVector.java
b/src/jalview/ws/rest/params/SeqGroupIndexVector.java
index
66724b8
..
1a7c63f
100644
(file)
--- a/
src/jalview/ws/rest/params/SeqGroupIndexVector.java
+++ b/
src/jalview/ws/rest/params/SeqGroupIndexVector.java
@@
-80,14
+80,18
@@
public class SeqGroupIndexVector extends InputType implements AlignmentProcessor
srt[i]=vals[i][0];
jalview.util.QuickSort.sort(srt, vals);
list=false;
srt[i]=vals[i][0];
jalview.util.QuickSort.sort(srt, vals);
list=false;
+ int last=vals[0][0];
for (int[] range:vals)
{
for (int[] range:vals)
{
- if (list)
+ if (range[1]>last) {
+ if (list)
{
idvector.append(sep);
}
{
idvector.append(sep);
}
- idvector.append(range[1]-range[0]+1);
+ idvector.append(range[1]-last+1);
+ last=range[1];
list=true;
list=true;
+ }
}
return new StringBody(idvector.toString());
}
}
return new StringBody(idvector.toString());
}