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Count uniprot refs
author
amwaterhouse
<Andrew Waterhouse>
Wed, 19 Jul 2006 10:57:43 +0000
(10:57 +0000)
committer
amwaterhouse
<Andrew Waterhouse>
Wed, 19 Jul 2006 10:57:43 +0000
(10:57 +0000)
src/jalview/io/DasSequenceFeatureFetcher.java
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diff --git
a/src/jalview/io/DasSequenceFeatureFetcher.java
b/src/jalview/io/DasSequenceFeatureFetcher.java
index
20ae27c
..
b4dd1f6
100755
(executable)
--- a/
src/jalview/io/DasSequenceFeatureFetcher.java
+++ b/
src/jalview/io/DasSequenceFeatureFetcher.java
@@
-83,7
+83,8
@@
public class DasSequenceFeatureFetcher implements Runnable
DasCoordinateSystem[] coords = source.getCoordinateSystem();
\r
for (int c = 0; c < coords.length; c++)
\r
{
\r
DasCoordinateSystem[] coords = source.getCoordinateSystem();
\r
for (int c = 0; c < coords.length; c++)
\r
{
\r
- if (coords[c].getName().equalsIgnoreCase("UniProt"))
\r
+ System.out.println(coords[c].getName());
\r
+ if (coords[c].getName().indexOf("UniProt")>-1)
\r
{
\r
uniprotCount++;
\r
break;
\r
{
\r
uniprotCount++;
\r
break;
\r
@@
-99,9
+100,10
@@
public class DasSequenceFeatureFetcher implements Runnable
{
\r
for(int j=0; j<dbref.size(); j++)
\r
{
\r
{
\r
for(int j=0; j<dbref.size(); j++)
\r
{
\r
- System.out.println(dbref.elementAt(j)
\r
+ DBRefEntry entry = (DBRefEntry)dbref.elementAt(j);
\r
+ System.out.println(entry.getSource()
\r
+" "+jalview.datamodel.DBRefSource.UNIPROT);
\r
+" "+jalview.datamodel.DBRefSource.UNIPROT);
\r
- if(dbref.elementAt(j)
\r
+ if(entry.getSource()
\r
.equals(jalview.datamodel.DBRefSource.UNIPROT))
\r
{
\r
System.out.println("got a match");
\r
.equals(jalview.datamodel.DBRefSource.UNIPROT))
\r
{
\r
System.out.println("got a match");
\r