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ensure current dataset reference is passed to the crossReference search method
author
jprocter
<Jim Procter>
Wed, 1 Aug 2007 16:27:27 +0000
(16:27 +0000)
committer
jprocter
<Jim Procter>
Wed, 1 Aug 2007 16:27:27 +0000
(16:27 +0000)
src/jalview/gui/AlignFrame.java
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diff --git
a/src/jalview/gui/AlignFrame.java
b/src/jalview/gui/AlignFrame.java
index
e870dea
..
6302efb
100755
(executable)
--- a/
src/jalview/gui/AlignFrame.java
+++ b/
src/jalview/gui/AlignFrame.java
@@
-3617,6
+3617,7
@@
public class AlignFrame
}
protected void showProductsFor(SequenceI[] sel, Alignment ds, boolean isRegSel, boolean dna, String source)
{
}
protected void showProductsFor(SequenceI[] sel, Alignment ds, boolean isRegSel, boolean dna, String source)
{
+ ds = this.getViewport().alignment.getDataset(); // update our local dataset reference
Alignment prods = CrossRef.findXrefSequences(sel, dna, source, ds);
if (prods!=null)
{
Alignment prods = CrossRef.findXrefSequences(sel, dna, source, ds);
if (prods!=null)
{
@@
-3624,7
+3625,7
@@
protected void showProductsFor(SequenceI[] sel, Alignment ds, boolean isRegSel,
for (int s=0; s<sprods.length;s++)
{
sprods[s] = (prods.getSequenceAt(s)).deriveSequence();
for (int s=0; s<sprods.length;s++)
{
sprods[s] = (prods.getSequenceAt(s)).deriveSequence();
- if (!ds.getSequences().contains(sprods[s].getDatasetSequence()))
+ if (ds.getSequences()==null || !ds.getSequences().contains(sprods[s].getDatasetSequence()))
ds.addSequence(sprods[s].getDatasetSequence());
}
Alignment al = new Alignment(sprods);
ds.addSequence(sprods[s].getDatasetSequence());
}
Alignment al = new Alignment(sprods);