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reset if clustalX colouring
author
amwaterhouse
<Andrew Waterhouse>
Tue, 14 Jun 2005 15:01:21 +0000
(15:01 +0000)
committer
amwaterhouse
<Andrew Waterhouse>
Tue, 14 Jun 2005 15:01:21 +0000
(15:01 +0000)
src/jalview/datamodel/SequenceGroup.java
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diff --git
a/src/jalview/datamodel/SequenceGroup.java
b/src/jalview/datamodel/SequenceGroup.java
index
b4c21fc
..
116e172
100755
(executable)
--- a/
src/jalview/datamodel/SequenceGroup.java
+++ b/
src/jalview/datamodel/SequenceGroup.java
@@
-156,11
+156,18
@@
public class SequenceGroup
\r
public void recalcConservation()
\r
{
\r
\r
public void recalcConservation()
\r
{
\r
+ System.out.println("sg recalc");
\r
if (cs != null)
\r
{
\r
cs.setConsensus(AAFrequency.calculate(sequences, 0, getWidth()));
\r
}
\r
\r
if (cs != null)
\r
{
\r
cs.setConsensus(AAFrequency.calculate(sequences, 0, getWidth()));
\r
}
\r
\r
+ if (cs instanceof ClustalxColourScheme)
\r
+ {
\r
+ ( (ClustalxColourScheme) cs).resetClustalX(sequences,getWidth());
\r
+ }
\r
+
\r
+
\r
if ( cs instanceof ConservationColourScheme)
\r
{
\r
Conservation c = new Conservation(groupName,
\r
if ( cs instanceof ConservationColourScheme)
\r
{
\r
Conservation c = new Conservation(groupName,
\r
@@
-171,6
+178,11
@@
public class SequenceGroup
\r
ConservationColourScheme ccs = (ConservationColourScheme) cs;
\r
ccs.conserve = c;
\r
\r
ConservationColourScheme ccs = (ConservationColourScheme) cs;
\r
ccs.conserve = c;
\r
+ if (ccs.cs instanceof ClustalxColourScheme)
\r
+ {
\r
+ ( (ClustalxColourScheme) ccs.cs).resetClustalX(sequences, getWidth());
\r
+ }
\r
+
\r
}
\r
}
\r
\r
}
\r
}
\r
\r