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added commented out seqStrings comment.
author
jprocter
<Jim Procter>
Mon, 7 Aug 2006 12:20:12 +0000
(12:20 +0000)
committer
jprocter
<Jim Procter>
Mon, 7 Aug 2006 12:20:12 +0000
(12:20 +0000)
src/jalview/appletgui/TreePanel.java
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diff --git
a/src/jalview/appletgui/TreePanel.java
b/src/jalview/appletgui/TreePanel.java
index
ddfcbe3
..
9c71a15
100755
(executable)
--- a/
src/jalview/appletgui/TreePanel.java
+++ b/
src/jalview/appletgui/TreePanel.java
@@
-134,11
+134,11
@@
public class TreePanel extends Frame implements ActionListener, ItemListener
{
\r
int start, end;
\r
SequenceI [] seqs;
\r
{
\r
int start, end;
\r
SequenceI [] seqs;
\r
- CigarArray seqStrings = null;
\r
- // if (av.hasHiddenColumns)
\r
- {
\r
- // seqStrings = av.getSelectionAsString();
\r
- }
\r
+ String[] seqStrings = null;
\r
+// if (av.hasHiddenColumns)
\r
+ // {
\r
+ // seqStrings = av.getAlignmentView(av.getSelectionGroup()!=null); // av.getSelectionAsString();
\r
+ // }
\r
\r
if(av.getSelectionGroup()==null)
\r
{
\r
\r
if(av.getSelectionGroup()==null)
\r
{
\r
@@
-153,7
+153,7
@@
public class TreePanel extends Frame implements ActionListener, ItemListener
seqs = av.getSelectionGroup().getSequencesInOrder(av.alignment);
\r
}
\r
\r
seqs = av.getSelectionGroup().getSequencesInOrder(av.alignment);
\r
}
\r
\r
- tree = new NJTree(seqs, seqStrings, type, pwtype, start, end);
\r
+ tree = new NJTree(seqs, null, type, pwtype, start, end);
\r
}
\r
\r
tree.reCount(tree.getTopNode());
\r
}
\r
\r
tree.reCount(tree.getTopNode());
\r