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update start and end res when copying
author
amwaterhouse
<Andrew Waterhouse>
Fri, 11 Feb 2005 11:03:47 +0000
(11:03 +0000)
committer
amwaterhouse
<Andrew Waterhouse>
Fri, 11 Feb 2005 11:03:47 +0000
(11:03 +0000)
src/jalview/gui/AlignFrame.java
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diff --git
a/src/jalview/gui/AlignFrame.java
b/src/jalview/gui/AlignFrame.java
index
83f7ba0
..
7f8b8e9
100755
(executable)
--- a/
src/jalview/gui/AlignFrame.java
+++ b/
src/jalview/gui/AlignFrame.java
@@
-210,7
+210,8
@@
public class AlignFrame extends GAlignFrame
for(int i=0; i<sg.getSize(); i++)
\r
{
\r
SequenceI seq = sg.getSequenceAt(i);
\r
for(int i=0; i<sg.getSize(); i++)
\r
{
\r
SequenceI seq = sg.getSequenceAt(i);
\r
- buffer.append( seq.getName()+"\t"+seq.getStart() +"\t"+seq.getEnd()+"\t"
\r
+ buffer.append( seq.getName()+"\t"+seq.findPosition( sg.getStartRes() ) +"\t"
\r
+ +seq.findPosition( sg.getEndRes() )+ "\t"
\r
+sg.getSequenceAt(i).getSequence(sg.getStartRes(), sg.getEndRes()+1)+"\n");
\r
}
\r
c.setContents( new StringSelection( buffer.toString()) , null ) ;
\r
+sg.getSequenceAt(i).getSequence(sg.getStartRes(), sg.getEndRes()+1)+"\n");
\r
}
\r
c.setContents( new StringSelection( buffer.toString()) , null ) ;
\r
@@
-244,8
+245,8
@@
public class AlignFrame extends GAlignFrame
String name = st.nextToken();
\r
int start = Integer.parseInt(st.nextToken());
\r
int end = Integer.parseInt(st.nextToken());
\r
String name = st.nextToken();
\r
int start = Integer.parseInt(st.nextToken());
\r
int end = Integer.parseInt(st.nextToken());
\r
+ Sequence sequence = new Sequence(name,st.nextToken(), start, end);
\r
\r
\r
- Sequence sequence = new Sequence(name, st.nextToken(), start, end);
\r
if(!newAlignment)
\r
viewport.alignment.addSequence(sequence);
\r
else
\r
if(!newAlignment)
\r
viewport.alignment.addSequence(sequence);
\r
else
\r