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JAL-1705 ENSEMBL added, unused constants removed
author
gmungoc
<g.m.carstairs@dundee.ac.uk>
Thu, 21 Jan 2016 15:31:11 +0000
(15:31 +0000)
committer
gmungoc
<g.m.carstairs@dundee.ac.uk>
Thu, 21 Jan 2016 15:31:11 +0000
(15:31 +0000)
src/jalview/datamodel/DBRefSource.java
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diff --git
a/src/jalview/datamodel/DBRefSource.java
b/src/jalview/datamodel/DBRefSource.java
index
99c68ba
..
8783e4f
100755
(executable)
--- a/
src/jalview/datamodel/DBRefSource.java
+++ b/
src/jalview/datamodel/DBRefSource.java
@@
-79,19
+79,18
@@
public class DBRefSource
public static final String GENEDB = "GeneDB".toUpperCase();
/**
public static final String GENEDB = "GeneDB".toUpperCase();
/**
+ * Ensembl
+ */
+ public static final String ENSEMBL = "ENSEMBL";
+
+ /**
* List of databases whose sequences might have coding regions annotated
*/
* List of databases whose sequences might have coding regions annotated
*/
- public static final String[] DNACODINGDBS = { EMBL, EMBLCDS, GENEDB };
+ public static final String[] DNACODINGDBS = { EMBL, EMBLCDS, GENEDB,
+ ENSEMBL };
- public static final String[] CODINGDBS = { EMBLCDS, GENEDB };
+ public static final String[] CODINGDBS = { EMBLCDS, GENEDB, ENSEMBL };
public static final String[] PROTEINDBS = { UNIPROT, PDB, UNIPROTKB,
public static final String[] PROTEINDBS = { UNIPROT, PDB, UNIPROTKB,
- EMBLCDSProduct };
-
- public static final String[] PROTEINSEQ = { UNIPROT, UNIPROTKB,
- EMBLCDSProduct };
-
- public static final String[] PROTEINSTR = { PDB };
-
- public static final String[] DOMAINDBS = { PFAM, RFAM };
+ EMBLCDSProduct, ENSEMBL }; // Ensembl ENSP* entries are protein
}
}