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JAL-942 - sensible name on window
author
jprocter
<jprocter@compbio.dundee.ac.uk>
Mon, 5 Mar 2012 09:36:29 +0000
(10:36 +0100)
committer
jprocter
<jprocter@compbio.dundee.ac.uk>
Mon, 5 Mar 2012 09:36:29 +0000
(10:36 +0100)
src/jalview/gui/AppVarna.java
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diff --git
a/src/jalview/gui/AppVarna.java
b/src/jalview/gui/AppVarna.java
index
27c28ad
..
da6c6e5
100644
(file)
--- a/
src/jalview/gui/AppVarna.java
+++ b/
src/jalview/gui/AppVarna.java
@@
-89,7
+89,7
@@
public class AppVarna extends JInternalFrame implements
{
e3.printStackTrace();
}
{
e3.printStackTrace();
}
- RNA trim = trimRNA(rna1);
+ RNA trim = trimRNA(rna1, "trimmed "+sname);
rnaList.add(trim);
rnaList.add(rna1);
rnas.put(seq, rna1);
rnaList.add(trim);
rnaList.add(rna1);
rnas.put(seq, rna1);
@@
-110,7
+110,7
@@
public class AppVarna extends JInternalFrame implements
vab = new AppVarnaBinding(rnaList);
// vab = new AppVarnaBinding(seq,struc);
// System.out.println("Hallo: "+name);
vab = new AppVarnaBinding(rnaList);
// vab = new AppVarnaBinding(seq,struc);
// System.out.println("Hallo: "+name);
- this.name = name;
+ this.name = sname+" trimmed to "+name;
initVarna();
ssm = ap.getStructureSelectionManager();
ssm.addStructureViewerListener(this);
initVarna();
ssm = ap.getStructureSelectionManager();
ssm.addStructureViewerListener(this);
@@
-145,10
+145,10
@@
public class AppVarna extends JInternalFrame implements
return newStr;
}
return newStr;
}
- public RNA trimRNA(RNA rna)
+ public RNA trimRNA(RNA rna, String name)
{
ShiftList offset = new ShiftList();
{
ShiftList offset = new ShiftList();
- RNA rnaTrim = new RNA("trim_" + rna.getName());
+ RNA rnaTrim = new RNA(name);
try
{
rnaTrim.setRNA(rna.getSeq(), replaceOddGaps(rna.getStructDBN()));
try
{
rnaTrim.setRNA(rna.getSeq(), replaceOddGaps(rna.getStructDBN()));