- /* void updateResidueView()\r
- {\r
- if (viewport.getSelection().size() == 0)\r
- {\r
- for (int i = 0; i < viewport.alignment.getGroups().size(); i++)\r
- {\r
- SequenceGroup sg = (SequenceGroup) viewport.alignment.getGroups().elementAt(i);\r
- sg.setDisplayBoxes( viewBoxesMenuItem.isSelected() );\r
- sg.setDisplayText( viewTextMenuItem.isSelected() );\r
- sg.setColourText( colourTextMenuItem.isSelected() );\r
- }\r
- }\r
- else\r
- {\r
- SequenceGroup sg = viewport.alignment.findGroup( (Sequence) viewport.sel.sequenceAt(0));\r
- if (alignPanel.seqPanel.isNewSelection(sg))\r
- {\r
- sg = viewport.getAlignment().addGroup();\r
- for (int i = 0; i < viewport.getSelection().size(); i++)\r
- {\r
- viewport.alignment.removeFromGroup(viewport.alignment.findGroup( (\r
- Sequence) viewport.sel.sequenceAt(i)),\r
- (Sequence) viewport.sel.sequenceAt(\r
- i));\r
- viewport.alignment.addToGroup(sg,\r
- (Sequence) viewport.sel.sequenceAt(i));\r
- }\r
- }\r
-\r
- sg.setDisplayBoxes(viewBoxesMenuItem.isSelected());\r
- sg.setDisplayText(viewTextMenuItem.isSelected());\r
- sg.setColourText(colourTextMenuItem.isSelected());\r
- }\r
- alignPanel.RefreshPanels();\r
- }*/\r
-\r
-\r