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dont add char[] ref to a string
author
amwaterhouse
<Andrew Waterhouse>
Thu, 7 Dec 2006 10:23:49 +0000
(10:23 +0000)
committer
amwaterhouse
<Andrew Waterhouse>
Thu, 7 Dec 2006 10:23:49 +0000
(10:23 +0000)
src/jalview/datamodel/AlignmentView.java
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diff --git
a/src/jalview/datamodel/AlignmentView.java
b/src/jalview/datamodel/AlignmentView.java
index
58b379b
..
8b86a82
100644
(file)
--- a/
src/jalview/datamodel/AlignmentView.java
+++ b/
src/jalview/datamodel/AlignmentView.java
@@
-245,7
+245,7
@@
public class AlignmentView
else
{
alignment[s].setSequence(alignment[s].getSequenceAsString() +
else
{
alignment[s].setSequence(alignment[s].getSequenceAsString() +
- mseq[s].getSequence());
+ mseq[s].getSequenceAsString());
if (mseq[s].getStart() <= mseq[s].getEnd())
{
alignment[s].setEnd(mseq[s].getEnd());
if (mseq[s].getStart() <= mseq[s].getEnd())
{
alignment[s].setEnd(mseq[s].getEnd());
@@
-277,7
+277,7
@@
public class AlignmentView
else
{
alignment[s].setSequence(alignment[s].getSequenceAsString() +
else
{
alignment[s].setSequence(alignment[s].getSequenceAsString() +
- oseq.getSequence());
+ oseq.getSequenceAsString());
if (oseq.getEnd() >= oseq.getStart())
{
alignment[s].setEnd(oseq.getEnd());
if (oseq.getEnd() >= oseq.getStart())
{
alignment[s].setEnd(oseq.getEnd());
@@
-304,7
+304,7
@@
public class AlignmentView
else
{
alignment[s].setSequence(alignment[s].getSequenceAsString() +
else
{
alignment[s].setSequence(alignment[s].getSequenceAsString() +
- hseq.getSequence());
+ hseq.getSequenceAsString());
if (hseq.getEnd() >= hseq.getStart())
{
alignment[s].setEnd(hseq.getEnd());
if (hseq.getEnd() >= hseq.getStart())
{
alignment[s].setEnd(hseq.getEnd());
@@
-333,7
+333,7
@@
public class AlignmentView
else
{
alignment[s].setSequence(alignment[s].getSequenceAsString() +
else
{
alignment[s].setSequence(alignment[s].getSequenceAsString() +
- mseq[s].getSequence());
+ mseq[s].getSequenceAsString());
if (mseq[s].getEnd() >= mseq[s].getStart())
{
alignment[s].setEnd(mseq[s].getEnd());
if (mseq[s].getEnd() >= mseq[s].getStart())
{
alignment[s].setEnd(mseq[s].getEnd());
@@
-367,7
+367,7
@@
public class AlignmentView
else
{
alignment[s].setSequence(alignment[s].getSequenceAsString() +
else
{
alignment[s].setSequence(alignment[s].getSequenceAsString() +
- oseq.getSequence());
+ oseq.getSequenceAsString());
if (oseq.getEnd() >= oseq.getStart())
{
alignment[s].setEnd(oseq.getEnd());
if (oseq.getEnd() >= oseq.getStart())
{
alignment[s].setEnd(oseq.getEnd());