git://source.jalview.org
/
jalview.git
/ commitdiff
commit
grep
author
committer
pickaxe
?
search:
re
summary
|
shortlog
|
log
|
commit
| commitdiff |
tree
raw
|
patch
|
inline
| side by side (parent:
9e28d56
)
javadoc
author
jprocter
<Jim Procter>
Fri, 17 Dec 2010 13:17:03 +0000
(13:17 +0000)
committer
jprocter
<Jim Procter>
Fri, 17 Dec 2010 13:17:03 +0000
(13:17 +0000)
src/jalview/datamodel/SequenceGroup.java
patch
|
blob
|
history
diff --git
a/src/jalview/datamodel/SequenceGroup.java
b/src/jalview/datamodel/SequenceGroup.java
index
f045555
..
7bb9670
100755
(executable)
--- a/
src/jalview/datamodel/SequenceGroup.java
+++ b/
src/jalview/datamodel/SequenceGroup.java
@@
-440,7
+440,9
@@
public class SequenceGroup
}
/**
}
/**
- * Add s to this sequence group
+ * Add s to this sequence group. If aligment sequence is already contained in
+ * group, it will not be added again, but recalculation may happen if the flag
+ * is set.
*
* @param s
* alignment sequence to be added
*
* @param s
* alignment sequence to be added
@@
-794,9
+796,12
@@
public class SequenceGroup
{
return getSequencesInOrder(al, true);
}
{
return getSequencesInOrder(al, true);
}
+
/**
/**
- * return an array representing the intersection of the group with al, optionally returning an array the size of al.getHeight()
- * where nulls mark the non-intersected sequences
+ * return an array representing the intersection of the group with al,
+ * optionally returning an array the size of al.getHeight() where nulls mark
+ * the non-intersected sequences
+ *
* @param al
* @param trim
* @return null or array
* @param al
* @param trim
* @return null or array