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1.2 compatibility
author
jprocter
<Jim Procter>
Fri, 27 Aug 2010 13:02:02 +0000
(13:02 +0000)
committer
jprocter
<Jim Procter>
Fri, 27 Aug 2010 13:02:02 +0000
(13:02 +0000)
src/jalview/ext/jmol/JalviewJmolBinding.java
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diff --git
a/src/jalview/ext/jmol/JalviewJmolBinding.java
b/src/jalview/ext/jmol/JalviewJmolBinding.java
index
8831bd6
..
f8fe17b
100644
(file)
--- a/
src/jalview/ext/jmol/JalviewJmolBinding.java
+++ b/
src/jalview/ext/jmol/JalviewJmolBinding.java
@@
-363,7
+363,7
@@
public abstract class JalviewJmolBinding implements StructureListener,
}
}
}
}
}
}
- StringBuffer selcom[] = new StringBuffer[files.length];
+ String[] selcom = new String[files.length];
// generate select statements to select regions to superimpose structures
{
for (int pdbfnum = 0; pdbfnum < files.length; pdbfnum++)
// generate select statements to select regions to superimpose structures
{
for (int pdbfnum = 0; pdbfnum < files.length; pdbfnum++)
@@
-371,7
+371,7
@@
public abstract class JalviewJmolBinding implements StructureListener,
String chainCd = targetC[pdbfnum];
int lpos = -1;
boolean run = false;
String chainCd = targetC[pdbfnum];
int lpos = -1;
boolean run = false;
- StringBuffer molsel = (selcom[pdbfnum] = new StringBuffer());
+ StringBuffer molsel = new StringBuffer();
molsel.append("{");
for (int r = 0; r < matched.length; r++)
{
molsel.append("{");
for (int r = 0; r < matched.length; r++)
{
@@
-411,8
+411,9
@@
public abstract class JalviewJmolBinding implements StructureListener,
molsel.append(chainCd);
molsel.append("}");
}
molsel.append(chainCd);
molsel.append("}");
}
+ selcom[pdbfnum] = molsel.toString();
selectioncom.append("((");
selectioncom.append("((");
- selectioncom.append(molsel.subSequence(1, molsel.length()-1));
+ selectioncom.append(selcom[pdbfnum].substring(1, selcom[pdbfnum].length()-1));
selectioncom.append(" )& ");
selectioncom.append(pdbfnum+1);
selectioncom.append(".1)");
selectioncom.append(" )& ");
selectioncom.append(pdbfnum+1);
selectioncom.append(".1)");