+ ignoreGapsInConsensus = state;
+ recalcConservation();
+ }
+ ignoreGapsInConsensus = state;
+ }
+ public boolean getIgnoreGapsConsensus()
+ {
+ return ignoreGapsInConsensus;
+ }
+ /**
+ * @param includeAllConsSymbols the includeAllConsSymbols to set
+ */
+ public void setIncludeAllConsSymbols(boolean includeAllConsSymbols)
+ {
+ if (this.includeAllConsSymbols!=includeAllConsSymbols && consensus!=null) {
+ this.includeAllConsSymbols = includeAllConsSymbols;