- for (int i = 0, j = del.size(); i < j; i++)\r
- {\r
- SequenceI sq = (SequenceI) del.elementAt(i);\r
- sq.deleteChars(0, sq.getLength());\r
- }\r
+ SequenceI [] deleted = new SequenceI[del.size()];\r
+\r
+ int width = 0;\r
+\r
+ for (int i = 0, j = del.size(); i < j; i++)\r
+ {\r
+ deleted[i] = (SequenceI)del.elementAt(i);\r
+ if(deleted[i].getLength()>width)\r
+ width = deleted[i].getLength();\r
+ }\r
+\r
+ EditCommand cut = new EditCommand("Remove Redundancy",\r
+ EditCommand.CUT, deleted,0,width,ap.av.alignment);\r
+\r
+ historyList.push(cut);\r
+\r
+ ap.av.firePropertyChange("alignment", null, ap.av.getAlignment().getSequences());\r