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ignore jnetconf
author
amwaterhouse
<Andrew Waterhouse>
Fri, 1 Apr 2005 16:45:29 +0000
(16:45 +0000)
committer
amwaterhouse
<Andrew Waterhouse>
Fri, 1 Apr 2005 16:45:29 +0000
(16:45 +0000)
src/jalview/io/JPredFile.java
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diff --git
a/src/jalview/io/JPredFile.java
b/src/jalview/io/JPredFile.java
index
754b539
..
92d9819
100755
(executable)
--- a/
src/jalview/io/JPredFile.java
+++ b/
src/jalview/io/JPredFile.java
@@
-44,7
+44,7
@@
public class JPredFile
public void parse()
throws IOException
{
public void parse()
throws IOException
{
-
+System.out.println("all read in ");
String line;
noSeqs = 0;
String line;
noSeqs = 0;
@@
-56,7
+56,6
@@
public class JPredFile
// Concise format allows no comments or non comma-formatted data
StringTokenizer str = new StringTokenizer(line, ":");
String id = "";
// Concise format allows no comments or non comma-formatted data
StringTokenizer str = new StringTokenizer(line, ":");
String id = "";
- String seq = "";
if (!str.hasMoreTokens())
{
continue;
if (!str.hasMoreTokens())
{
continue;
@@
-116,9
+115,10
@@
public class JPredFile
}
Scores.put(id, scores);
}
}
Scores.put(id, scores);
}
- } else
- if (id.equals("jnetconf"))
+ }
+ else if (id.equals("jnetconf"))
{
{
+ System.out.println("here");
id = "Prediction Confidence";
this.conf = new Vector(numSymbols);
for (int i = 0; i < numSymbols; i++)
id = "Prediction Confidence";
this.conf = new Vector(numSymbols);
for (int i = 0; i < numSymbols; i++)