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Check seqs in group exist in this alignment
author
amwaterhouse
<Andrew Waterhouse>
Tue, 30 Jan 2007 15:35:26 +0000
(15:35 +0000)
committer
amwaterhouse
<Andrew Waterhouse>
Tue, 30 Jan 2007 15:35:26 +0000
(15:35 +0000)
src/jalview/gui/Jalview2XML.java
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diff --git
a/src/jalview/gui/Jalview2XML.java
b/src/jalview/gui/Jalview2XML.java
index
0cac9c1
..
e15f54b
100755
(executable)
--- a/
src/jalview/gui/Jalview2XML.java
+++ b/
src/jalview/gui/Jalview2XML.java
@@
-1313,9
+1313,16
@@
public class Jalview2XML
for (int s = 0; s < groups[i].getSeqCount(); s++)
{
String seqId = groups[i].getSeq(s)+"";
for (int s = 0; s < groups[i].getSeqCount(); s++)
{
String seqId = groups[i].getSeq(s)+"";
- seqs.addElement((jalview.datamodel.SequenceI) seqRefIds.get(seqId));
+ jalview.datamodel.SequenceI ts = (jalview.datamodel.SequenceI)
+ seqRefIds.get(seqId);
+
+ if (ts != null)
+ seqs.addElement(ts);
}
}
+ if(seqs.size()<1)
+ continue;
+
jalview.datamodel.SequenceGroup sg = new jalview.datamodel.SequenceGroup(seqs,
groups[i].getName(), cs, groups[i].getDisplayBoxes(),
groups[i].getDisplayText(), groups[i].getColourText(),
jalview.datamodel.SequenceGroup sg = new jalview.datamodel.SequenceGroup(seqs,
groups[i].getName(), cs, groups[i].getDisplayBoxes(),
groups[i].getDisplayText(), groups[i].getColourText(),