import jalview.datamodel.AlignmentAnnotation;
import jalview.datamodel.AnnotatedCollectionI;
import jalview.datamodel.SequenceCollectionI;
import jalview.datamodel.SequenceI;
import jalview.datamodel.AlignmentAnnotation;
import jalview.datamodel.AnnotatedCollectionI;
import jalview.datamodel.SequenceCollectionI;
import jalview.datamodel.SequenceI;
/**
* Looks at the information computed from an RNA Stockholm format file on the
* secondary structure of the alignment. Extracts the information on the
/**
* Looks at the information computed from an RNA Stockholm format file on the
* secondary structure of the alignment. Extracts the information on the