git://source.jalview.org
/
jalview.git
/ commitdiff
commit
grep
author
committer
pickaxe
?
search:
re
summary
|
shortlog
|
log
|
commit
| commitdiff |
tree
raw
|
patch
|
inline
| side by side (parent:
0ed68dd
)
javadoc
author
jprocter
<Jim Procter>
Mon, 30 Jul 2007 17:01:20 +0000
(17:01 +0000)
committer
jprocter
<Jim Procter>
Mon, 30 Jul 2007 17:01:20 +0000
(17:01 +0000)
src/jalview/datamodel/Sequence.java
patch
|
blob
|
history
diff --git
a/src/jalview/datamodel/Sequence.java
b/src/jalview/datamodel/Sequence.java
index
16ba407
..
0e72690
100755
(executable)
--- a/
src/jalview/datamodel/Sequence.java
+++ b/
src/jalview/datamodel/Sequence.java
@@
-24,7
+24,8
@@
import java.util.*;
import jalview.analysis.*;
/**
import jalview.analysis.*;
/**
- * DOCUMENT ME!
+ *
+ * Implements the SequenceI interface for a char[] based sequence object.
*
* @author $author$
* @version $Revision$
*
* @author $author$
* @version $Revision$
@@
-46,17
+47,17
@@
public class Sequence
* positions are tied to the residues of this sequence */
Vector annotation;
* positions are tied to the residues of this sequence */
Vector annotation;
- /** DOCUMENT ME!! */
+ /** array of seuqence features - may not be null for a valid sequence object */
public SequenceFeature[] sequenceFeatures;
/**
* Creates a new Sequence object.
*
public SequenceFeature[] sequenceFeatures;
/**
* Creates a new Sequence object.
*
- * @param name DOCUMENT ME!
- * @param sequence DOCUMENT ME!
- * @param start DOCUMENT ME!
- * @param end DOCUMENT ME!
+ * @param name display name string
+ * @param sequence string to form a possibly gapped sequence out of
+ * @param start first position of non-gap residue in the sequence
+ * @param end last position of ungapped residues (nearly always only used for display purposes)
*/
public Sequence(String name, String sequence, int start, int end)
{
*/
public Sequence(String name, String sequence, int start, int end)
{