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stable url for PFAM retrieval via interpro api :) JAL-4073
author
Jim Procter
<j.procter@dundee.ac.uk>
Thu, 6 Oct 2022 17:13:09 +0000
(18:13 +0100)
committer
Jim Procter
<j.procter@dundee.ac.uk>
Thu, 6 Oct 2022 17:13:09 +0000
(18:13 +0100)
src/jalview/ws/dbsources/Pfam.java
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diff --git
a/src/jalview/ws/dbsources/Pfam.java
b/src/jalview/ws/dbsources/Pfam.java
index
93001a4
..
26c907c
100644
(file)
--- a/
src/jalview/ws/dbsources/Pfam.java
+++ b/
src/jalview/ws/dbsources/Pfam.java
@@
-39,7
+39,7
@@
import jalview.util.Platform;
abstract public class Pfam extends Xfam
{
public static final String FULL = "full", RP35 = "rp35", RP15 = "rp15",
abstract public class Pfam extends Xfam
{
public static final String FULL = "full", RP35 = "rp35", RP15 = "rp15",
- RP75 = "rp75", RP55 = "rp55", SEED = "seed";
+ RP75 = "rp75", RP55 = "rp55", SEED = "seed", UNIPROT = "uniprot";
public String getPfamDownloadURL(String id, String alType)
{
public String getPfamDownloadURL(String id, String alType)
{
@@
-53,7
+53,10
@@
abstract public class Pfam extends Xfam
protected String alignmentType;
protected String alignmentType;
- private static final String DEFAULT_PFAM_BASEURL = "https://www.ebi.ac.uk/interpro/wwwapi/entry/pfam/$PFAMID$/?annotation=alignment:$ALTYPE$&download";
+ /**
+ * docs are http://www.ebi.ac.uk/interpro/api/
+ */
+ private static final String DEFAULT_PFAM_BASEURL = "www.ebi.ac.uk/interpro/api/entry/pfam/$PFAMID$/?annotation=alignment:$ALTYPE";
static
{
static
{