+ public void padGapsMenuitem_actionPerformed(ActionEvent e)
+ {
+ addHistoryItem(new HistoryItem("Pad Gaps",
+ viewport.alignment,
+ HistoryItem.HIDE));
+ SequenceI current;
+ int Width = viewport.getAlignment().getWidth()-1;
+ for (int i=0; i < viewport.getAlignment().getSequences().size();i++)
+ {
+ current = viewport.getAlignment().getSequenceAt(i);
+
+ if (current.getLength()<Width)
+ current.insertCharAt(Width, viewport.getGapCharacter());
+ }
+ viewport.updateConservation();
+ viewport.updateConsensus();
+ alignPanel.repaint();
+ }
+
+