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proteinNames as vectors
author
amwaterhouse
<Andrew Waterhouse>
Wed, 20 Sep 2006 10:15:34 +0000
(10:15 +0000)
committer
amwaterhouse
<Andrew Waterhouse>
Wed, 20 Sep 2006 10:15:34 +0000
(10:15 +0000)
resources/uniprot_mapping.xml
patch
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diff --git
a/resources/uniprot_mapping.xml
b/resources/uniprot_mapping.xml
index
d6961aa
..
d955dd7
100755
(executable)
--- a/
resources/uniprot_mapping.xml
+++ b/
resources/uniprot_mapping.xml
@@
-2,7
+2,7
@@
<mapping>
\r
<class name="jalview.datamodel.UniprotFile">
\r
<map-to xml="uniprot"/>
\r
<mapping>
\r
<class name="jalview.datamodel.UniprotFile">
\r
<map-to xml="uniprot"/>
\r
- <field name="UniprotEntries" type="jalview.datamodel.UniprotEntry" collection="vector">
\r
+ <field name="UniprotEntries" type="jalview.datamodel.UniprotEntry" collection="vector">
\r
<bind-xml name="entry"/>
\r
</field>
\r
</class>
\r
<bind-xml name="entry"/>
\r
</field>
\r
</class>
\r
@@
-10,10
+10,9
@@
<class name="jalview.datamodel.UniprotEntry">
\r
<field name="name" type="string" collection="vector"/>
\r
<field name="accession" type="string" collection="vector"/>
\r
<class name="jalview.datamodel.UniprotEntry">
\r
<field name="name" type="string" collection="vector"/>
\r
<field name="accession" type="string" collection="vector"/>
\r
- <field name="proteinName" type="string" collection="vector">
\r
- <bind-xml name="name" location="entry/protein"/>
\r
+ <field name="protein" type="jalview.datamodel.UniprotProteinName">
\r
+ <bind-xml name="protein"/>
\r
</field>
\r
</field>
\r
-
\r
\r
<field name="UniprotSequence" type="jalview.datamodel.UniprotSequence">
\r
<bind-xml name="sequence"/>
\r
\r
<field name="UniprotSequence" type="jalview.datamodel.UniprotSequence">
\r
<bind-xml name="sequence"/>
\r
@@
-23,6
+22,12
@@
\r
</class>
\r
\r
\r
</class>
\r
\r
+ <class name="jalview.datamodel.UniprotProteinName">
\r
+ <field name="name" type="string" collection="vector">
\r
+ <bind-xml name="name"/>
\r
+ </field>
\r
+ </class>
\r
+
\r
\r
<class name="jalview.datamodel.SequenceFeature">
\r
<field name="type">
\r
\r
<class name="jalview.datamodel.SequenceFeature">
\r
<field name="type">
\r