JAL-4090 update 2.11.3.0 release notes (with in-progress bits too) and what's new

diff --git a/help/markdown/releases/release-2_11_3_0.md b/help/markdown/releases/release-2_11_3_0.md
index 1309483..fbd7b9f 100644 (file)
--- a/help/markdown/releases/release-2_11_3_0.md
+++ b/help/markdown/releases/release-2_11_3_0.md
@@ -1,6 +1,6 @@
 ---
 version: 2.11.3.0
 ---
 version: 2.11.3.0

-date: 2023-06-07
+date: 2023-07-19

 channel: "release"
 ---
 
 channel: "release"
 ---
 

@@ -20,6 +20,9 @@ channel: "release"
 - <!-- JAL-4089 --> Use selected columns for superposition
 - <!-- JAL-4086 --> Highlight aligned positions on all associated structures when mousing over a column
 
 - <!-- JAL-4089 --> Use selected columns for superposition
 - <!-- JAL-4086 --> Highlight aligned positions on all associated structures when mousing over a column
 

+- <!-- JAL-4221 --> sequence descriptions are updated from database reference sources if not already defined
+
+

 ### Improved support for working with computationally determined models
 
 - <!-- JAL-3895 --> Alphafold red/orange/yellow/green colourscheme for structures
 ### Improved support for working with computationally determined models
 
 - <!-- JAL-3895 --> Alphafold red/orange/yellow/green colourscheme for structures

@@ -35,6 +38,8 @@ channel: "release"
 - <!-- JAL-3858 --> Import and display alphafold alignment uncertainty matrices from JSON
 - <!-- JAL-4134,JAL-4158 --> Column-wise alignment groups and selections and interactive tree viewer for PAE matrices
 - <!-- JAL-4124 --> Store/Restore PAE data and visualisation settings from Jalview Project
 - <!-- JAL-3858 --> Import and display alphafold alignment uncertainty matrices from JSON
 - <!-- JAL-4134,JAL-4158 --> Column-wise alignment groups and selections and interactive tree viewer for PAE matrices
 - <!-- JAL-4124 --> Store/Restore PAE data and visualisation settings from Jalview Project

+- <!-- JAL-4083 --> Multiple residue sidechain highlighting in structure viewers from PAE mouseovers
+

 
 ### Jalview on the command line
 
 
 ### Jalview on the command line
 

@@ -44,6 +49,21 @@ channel: "release"
 ### Other improvements
 
 - <!-- JAL-3119 --> Name of alignment and view included in overview window's title
 ### Other improvements
 
 - <!-- JAL-3119 --> Name of alignment and view included in overview window's title

+- <!-- JAL-4213 --> "add reference annotation" add all positions in reference annotation tracks, not just positions in the currently highlighted columns/selection range
+- <!-- JAL-4119 --> EMBL-EBI SIFTS file downloads now use split directories
+
+- <!-- JAL-4195,JAL-4194,JAL-4193 --> sensible responses from the CLI when things go wrong during image export
+Add a command line option to set Jalview properties for this session only
+Add a command line option to suppress opening the startup file for this session
+
+
+JAL-4187        Powershell launcher script fails when given no arguments with the old ArgsParser
+
+known issue ? <!-- JAL-4127    --> 'Reload' for a jalview project results in all windows being duplicated
+
+
+- <!-- JAL-3830 --> Command-line wrapper script for macOS bundle, linux and Windows installations (bash, powershell and .bat wrappers)
+- <!-- JAL-3820 --> In Linux desktops' task-managers, the grouped Jalview windows get a generic name

 
 ## Still in progress (delete on release)
 
 
 ## Still in progress (delete on release)
 

diff --git a/help/markdown/whatsnew/whatsnew-2_11_3_0.md b/help/markdown/whatsnew/whatsnew-2_11_3_0.md
index 59495d5..ec82f83 100644 (file)
--- a/help/markdown/whatsnew/whatsnew-2_11_3_0.md
+++ b/help/markdown/whatsnew/whatsnew-2_11_3_0.md
@@ -1,5 +1,7 @@
 The 2.11.3 series includes support for in-depth exploration of predicted alignment error matrices from AlphaFold in the context of multiple alignments, along with support for standard colourschemes for shading models according to their pLDDT.
 
 The 2.11.3 series includes support for in-depth exploration of predicted alignment error matrices from AlphaFold in the context of multiple alignments, along with support for standard colourschemes for shading models according to their pLDDT.
 

+We're launching this release at ISMB 2023 - come find us !
+

 It also introduces new support for native ARM-based OSX architectures, and a few other goodies!
 
 
 It also introduces new support for native ARM-based OSX architectures, and a few other goodies!