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JAL-3032 use small example Ensembl gene for JalviewJS
author
gmungoc
<g.m.carstairs@dundee.ac.uk>
Mon, 1 Apr 2019 08:22:45 +0000
(09:22 +0100)
committer
gmungoc
<g.m.carstairs@dundee.ac.uk>
Mon, 1 Apr 2019 08:22:45 +0000
(09:22 +0100)
src/jalview/ext/ensembl/EnsemblGene.java
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diff --git
a/src/jalview/ext/ensembl/EnsemblGene.java
b/src/jalview/ext/ensembl/EnsemblGene.java
index
7904df3
..
0d73a47
100644
(file)
--- a/
src/jalview/ext/ensembl/EnsemblGene.java
+++ b/
src/jalview/ext/ensembl/EnsemblGene.java
@@
-135,9
+135,6
@@
public class EnsemblGene extends EnsemblSeqProxy
@Override
public AlignmentI getSequenceRecords(String query) throws Exception
{
@Override
public AlignmentI getSequenceRecords(String query) throws Exception
{
-
-
-
/*
* convert to a non-duplicated list of gene identifiers
*/
/*
* convert to a non-duplicated list of gene identifiers
*/
@@
-540,10
+537,11
@@
public class EnsemblGene extends EnsemblSeqProxy
@Override
public String getTestQuery()
{
@Override
public String getTestQuery()
{
- return "ENSG00000157764"; // BRAF, 5 transcripts, reverse strand
+ return Platform.isJS() ? "ENSG00000123569" : "ENSG00000157764";
+ // ENSG00000123569 // H2BFWT histone, 2 transcripts, reverse strand
+ // ENSG00000157764 // BRAF, 5 transcripts, reverse strand
// ENSG00000090266 // NDUFB2, 15 transcripts, forward strand
// ENSG00000101812 // H2BFM histone, 3 transcripts, forward strand
// ENSG00000090266 // NDUFB2, 15 transcripts, forward strand
// ENSG00000101812 // H2BFM histone, 3 transcripts, forward strand
- // ENSG00000123569 // H2BFWT histone, 2 transcripts, reverse strand
}
/**
}
/**